Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2397 and GFF2398 are separated by 49 nucleotides GFF2398 and GFF2399 are separated by 1 nucleotides
GFF2397 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 447,762 to 449,456
GFF2397
GFF2398 - Uncharacterized MFS-type transporter, at 449,506 to 450,933
GFF2398
GFF2399 - TonB-dependent receptor, at 450,935 to 453,469
GFF2399
Position (kb) 449
450
451 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 448.579 kb on + strand, within GFF2397 at 448.580 kb on - strand, within GFF2397 at 448.780 kb on + strand, within GFF2397 at 448.928 kb on - strand, within GFF2397 at 448.943 kb on - strand, within GFF2397 at 449.297 kb on - strand at 450.569 kb on + strand, within GFF2398 at 450.569 kb on + strand, within GFF2398 at 450.570 kb on - strand, within GFF2398 at 451.065 kb on + strand at 451.065 kb on + strand at 451.066 kb on - strand at 451.066 kb on - strand at 451.066 kb on - strand at 451.165 kb on - strand at 451.189 kb on - strand, within GFF2399 at 451.210 kb on - strand, within GFF2399 at 451.491 kb on + strand, within GFF2399 at 451.491 kb on + strand, within GFF2399 at 451.492 kb on - strand, within GFF2399 at 451.539 kb on + strand, within GFF2399 at 451.539 kb on + strand, within GFF2399 at 451.552 kb on - strand, within GFF2399 at 451.552 kb on - strand, within GFF2399 at 451.659 kb on + strand, within GFF2399 at 451.660 kb on - strand, within GFF2399 at 451.687 kb on - strand, within GFF2399 at 451.687 kb on - strand, within GFF2399 at 451.687 kb on - strand, within GFF2399 at 451.704 kb on + strand, within GFF2399 at 451.704 kb on + strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.705 kb on - strand, within GFF2399 at 451.786 kb on - strand, within GFF2399
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 448,579 + GFF2397 0.48 +1.3 448,580 - GFF2397 0.48 +0.1 448,780 + GFF2397 0.60 +1.6 448,928 - GFF2397 0.69 +0.9 448,943 - GFF2397 0.70 -1.2 449,297 - -2.9 450,569 + GFF2398 0.74 -4.1 450,569 + GFF2398 0.74 +1.1 450,570 - GFF2398 0.75 -0.7 451,065 + -1.0 451,065 + +0.2 451,066 - -1.3 451,066 - -1.7 451,066 - -3.9 451,165 - -0.5 451,189 - GFF2399 0.10 +0.7 451,210 - GFF2399 0.11 -0.6 451,491 + GFF2399 0.22 -2.6 451,491 + GFF2399 0.22 +1.0 451,492 - GFF2399 0.22 -1.0 451,539 + GFF2399 0.24 -2.6 451,539 + GFF2399 0.24 +1.6 451,552 - GFF2399 0.24 -1.7 451,552 - GFF2399 0.24 +0.1 451,659 + GFF2399 0.29 -1.2 451,660 - GFF2399 0.29 +3.6 451,687 - GFF2399 0.30 -0.3 451,687 - GFF2399 0.30 +1.4 451,687 - GFF2399 0.30 -2.5 451,704 + GFF2399 0.30 +1.1 451,704 + GFF2399 0.30 -0.7 451,705 - GFF2399 0.30 -0.3 451,705 - GFF2399 0.30 -2.0 451,705 - GFF2399 0.30 -0.7 451,705 - GFF2399 0.30 +0.5 451,705 - GFF2399 0.30 +0.1 451,705 - GFF2399 0.30 -0.2 451,705 - GFF2399 0.30 +2.7 451,705 - GFF2399 0.30 +3.0 451,705 - GFF2399 0.30 -1.8 451,786 - GFF2399 0.34 +0.1
Or see this region's nucleotide sequence