Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2332 and GFF2333 are separated by 32 nucleotides GFF2333 and GFF2334 are separated by 30 nucleotides GFF2334 and GFF2335 are separated by 79 nucleotides GFF2335 and GFF2336 overlap by 4 nucleotides
GFF2332 - Transcriptional regulator, LysR family, at 382,839 to 383,699
GFF2332
GFF2333 - hypothetical protein, at 383,732 to 384,142
GFF2333
GFF2334 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 384,173 to 385,363
GFF2334
GFF2335 - Lactoylglutathione lyase and related lyases, at 385,443 to 385,859
GFF2335
GFF2336 - Transcriptional regulator, AraC family, at 385,856 to 386,329
GFF2336
Position (kb) 384
385
386 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 383.466 kb on + strand, within GFF2332 at 383.533 kb on + strand, within GFF2332 at 383.533 kb on + strand, within GFF2332 at 383.534 kb on - strand, within GFF2332 at 383.534 kb on - strand, within GFF2332 at 383.760 kb on - strand at 383.760 kb on - strand at 383.768 kb on + strand at 383.768 kb on + strand at 383.768 kb on + strand at 383.769 kb on - strand at 383.769 kb on - strand at 383.864 kb on + strand, within GFF2333 at 383.888 kb on + strand, within GFF2333 at 383.889 kb on - strand, within GFF2333 at 383.889 kb on - strand, within GFF2333 at 383.889 kb on - strand, within GFF2333 at 384.044 kb on + strand, within GFF2333 at 384.291 kb on + strand at 384.291 kb on + strand at 384.292 kb on - strand, within GFF2334 at 384.292 kb on - strand, within GFF2334 at 384.292 kb on - strand, within GFF2334 at 384.292 kb on - strand, within GFF2334 at 384.292 kb on - strand, within GFF2334 at 384.366 kb on + strand, within GFF2334 at 384.367 kb on - strand, within GFF2334 at 384.651 kb on + strand, within GFF2334 at 384.651 kb on + strand, within GFF2334 at 384.652 kb on - strand, within GFF2334 at 384.673 kb on - strand, within GFF2334 at 384.673 kb on - strand, within GFF2334 at 384.724 kb on - strand, within GFF2334 at 384.724 kb on - strand, within GFF2334 at 384.777 kb on + strand, within GFF2334 at 384.777 kb on + strand, within GFF2334 at 384.778 kb on - strand, within GFF2334 at 384.786 kb on + strand, within GFF2334 at 384.786 kb on + strand, within GFF2334 at 384.786 kb on + strand, within GFF2334 at 385.182 kb on + strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.183 kb on - strand, within GFF2334 at 385.193 kb on + strand, within GFF2334 at 385.292 kb on + strand at 385.357 kb on + strand at 385.358 kb on - strand at 385.358 kb on - strand at 385.358 kb on - strand at 385.576 kb on + strand, within GFF2335 at 385.576 kb on + strand, within GFF2335 at 385.577 kb on - strand, within GFF2335 at 385.577 kb on - strand, within GFF2335 at 385.745 kb on - strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.795 kb on + strand, within GFF2335 at 385.796 kb on - strand, within GFF2335 at 385.796 kb on - strand, within GFF2335 at 385.796 kb on - strand, within GFF2335 at 385.828 kb on + strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.829 kb on - strand at 385.836 kb on + strand at 385.837 kb on - strand at 385.837 kb on - strand at 385.847 kb on + strand at 385.847 kb on + strand at 386.163 kb on + strand, within GFF2336 at 386.231 kb on + strand, within GFF2336
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 383,466 + GFF2332 0.73 -0.2 383,533 + GFF2332 0.81 -3.7 383,533 + GFF2332 0.81 -0.7 383,534 - GFF2332 0.81 -2.0 383,534 - GFF2332 0.81 -0.1 383,760 - -0.3 383,760 - +0.4 383,768 + +0.3 383,768 + -1.6 383,768 + -1.8 383,769 - +1.6 383,769 - -0.5 383,864 + GFF2333 0.32 +2.3 383,888 + GFF2333 0.38 -0.0 383,889 - GFF2333 0.38 -3.9 383,889 - GFF2333 0.38 -0.1 383,889 - GFF2333 0.38 -1.0 384,044 + GFF2333 0.76 -1.8 384,291 + -1.8 384,291 + -1.2 384,292 - GFF2334 0.10 +0.1 384,292 - GFF2334 0.10 -1.2 384,292 - GFF2334 0.10 +0.0 384,292 - GFF2334 0.10 -1.7 384,292 - GFF2334 0.10 -0.5 384,366 + GFF2334 0.16 -0.1 384,367 - GFF2334 0.16 +2.5 384,651 + GFF2334 0.40 -0.5 384,651 + GFF2334 0.40 +0.3 384,652 - GFF2334 0.40 -2.7 384,673 - GFF2334 0.42 +0.2 384,673 - GFF2334 0.42 -1.0 384,724 - GFF2334 0.46 -2.6 384,724 - GFF2334 0.46 -0.2 384,777 + GFF2334 0.51 +2.6 384,777 + GFF2334 0.51 -0.1 384,778 - GFF2334 0.51 -0.6 384,786 + GFF2334 0.51 +0.9 384,786 + GFF2334 0.51 -1.7 384,786 + GFF2334 0.51 -1.5 385,182 + GFF2334 0.85 +0.7 385,183 - GFF2334 0.85 +1.1 385,183 - GFF2334 0.85 -2.3 385,183 - GFF2334 0.85 -2.9 385,183 - GFF2334 0.85 +1.1 385,193 + GFF2334 0.86 +0.6 385,292 + -0.9 385,357 + -0.4 385,358 - -1.2 385,358 - +0.4 385,358 - +0.4 385,576 + GFF2335 0.32 +1.0 385,576 + GFF2335 0.32 -0.8 385,577 - GFF2335 0.32 -1.3 385,577 - GFF2335 0.32 +0.2 385,745 - GFF2335 0.72 -0.0 385,795 + GFF2335 0.84 -1.5 385,795 + GFF2335 0.84 -3.3 385,795 + GFF2335 0.84 -0.1 385,795 + GFF2335 0.84 -1.8 385,795 + GFF2335 0.84 -0.2 385,795 + GFF2335 0.84 +0.2 385,795 + GFF2335 0.84 -0.7 385,796 - GFF2335 0.85 +0.0 385,796 - GFF2335 0.85 -0.9 385,796 - GFF2335 0.85 -3.2 385,828 + -1.5 385,829 - -0.1 385,829 - +1.5 385,829 - +0.1 385,829 - +1.1 385,829 - +1.4 385,829 - -1.6 385,829 - +0.1 385,836 + -0.7 385,837 - +1.7 385,837 - +1.1 385,847 + -0.7 385,847 + -0.3 386,163 + GFF2336 0.65 +0.4 386,231 + GFF2336 0.79 -0.5
Or see this region's nucleotide sequence