Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2235 and GFF2236 overlap by 4 nucleotides GFF2236 and GFF2237 are separated by 70 nucleotides GFF2237 and GFF2238 are separated by 122 nucleotides GFF2238 and GFF2239 are separated by 274 nucleotides
GFF2235 - hypothetical protein, at 296,103 to 296,834
GFF2235
GFF2236 - hypothetical protein, at 296,831 to 297,247
GFF2236
GFF2237 - Intracellular protease, at 297,318 to 297,896
GFF2237
GFF2238 - hypothetical protein, at 298,019 to 298,480
GFF2238
GFF2239 - no description, at 298,755 to 299,171
GFF2239
Position (kb) 297
298 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 296.543 kb on + strand, within GFF2235 at 296.772 kb on + strand at 296.773 kb on - strand at 296.773 kb on - strand at 297.075 kb on + strand, within GFF2236 at 297.210 kb on + strand at 297.210 kb on + strand at 297.295 kb on - strand at 297.442 kb on + strand, within GFF2237 at 297.442 kb on + strand, within GFF2237 at 297.442 kb on + strand, within GFF2237 at 297.443 kb on - strand, within GFF2237 at 297.443 kb on - strand, within GFF2237 at 297.620 kb on - strand, within GFF2237 at 297.659 kb on - strand, within GFF2237 at 297.863 kb on - strand at 297.955 kb on + strand at 297.956 kb on - strand at 298.072 kb on - strand, within GFF2238 at 298.204 kb on - strand, within GFF2238 at 298.243 kb on - strand, within GFF2238 at 298.243 kb on - strand, within GFF2238 at 298.580 kb on - strand at 298.580 kb on - strand at 298.580 kb on - strand at 298.633 kb on + strand at 298.633 kb on + strand at 298.634 kb on - strand at 298.634 kb on - strand at 298.679 kb on - strand at 298.679 kb on - strand at 298.679 kb on - strand at 298.739 kb on + strand at 298.739 kb on + strand at 298.739 kb on + strand at 298.739 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 296,543 + GFF2235 0.60 +0.8 296,772 + -1.4 296,773 - +2.9 296,773 - +1.4 297,075 + GFF2236 0.59 -0.5 297,210 + -0.4 297,210 + -1.7 297,295 - -0.5 297,442 + GFF2237 0.21 +0.2 297,442 + GFF2237 0.21 -0.2 297,442 + GFF2237 0.21 -3.7 297,443 - GFF2237 0.22 +0.8 297,443 - GFF2237 0.22 -0.1 297,620 - GFF2237 0.52 +1.2 297,659 - GFF2237 0.59 +1.1 297,863 - -1.8 297,955 + -2.4 297,956 - +0.6 298,072 - GFF2238 0.11 -3.0 298,204 - GFF2238 0.40 -0.6 298,243 - GFF2238 0.48 -0.3 298,243 - GFF2238 0.48 -1.1 298,580 - -1.7 298,580 - -1.2 298,580 - -0.4 298,633 + +1.2 298,633 + -2.1 298,634 - +1.1 298,634 - +0.5 298,679 - +3.2 298,679 - -0.6 298,679 - +1.2 298,739 + -1.0 298,739 + -0.7 298,739 + +2.2 298,739 + -3.2
Or see this region's nucleotide sequence