Strain Fitness in Variovorax sp. SCN45 around GFF2154

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2151 and GFF2152 overlap by 1 nucleotidesGFF2152 and GFF2153 are separated by 19 nucleotidesGFF2153 and GFF2154 are separated by 42 nucleotidesGFF2154 and GFF2155 are separated by 184 nucleotides GFF2151 - twitching motility protein PilG, at 199,303 to 199,701 GFF2151 GFF2152 - twitching motility protein PilH, at 199,701 to 200,066 GFF2152 GFF2153 - type IV pili signal transduction protein PilI, at 200,086 to 200,619 GFF2153 GFF2154 - twitching motility protein PilJ, at 200,662 to 202,968 GFF2154 GFF2155 - Signal transduction histidine kinase CheA, at 203,153 to 209,362 GFF2155 Position (kb) 200 201 202 203Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 199.699 kb on + strandat 199.699 kb on + strandat 199.699 kb on + strandat 199.699 kb on + strandat 199.700 kb on - strandat 199.700 kb on - strandat 199.923 kb on + strand, within GFF2152at 199.923 kb on + strand, within GFF2152at 199.923 kb on + strand, within GFF2152at 199.923 kb on + strand, within GFF2152at 199.923 kb on + strand, within GFF2152at 199.923 kb on + strand, within GFF2152at 199.923 kb on + strand, within GFF2152at 199.923 kb on + strand, within GFF2152at 199.924 kb on - strand, within GFF2152at 199.924 kb on - strand, within GFF2152at 199.924 kb on - strand, within GFF2152at 199.924 kb on - strand, within GFF2152at 199.924 kb on - strand, within GFF2152at 199.924 kb on - strand, within GFF2152at 199.924 kb on - strand, within GFF2152at 199.931 kb on + strand, within GFF2152at 200.007 kb on + strand, within GFF2152at 200.007 kb on + strand, within GFF2152at 200.007 kb on + strand, within GFF2152at 200.007 kb on + strand, within GFF2152at 200.007 kb on + strand, within GFF2152at 200.008 kb on - strand, within GFF2152at 200.008 kb on - strand, within GFF2152at 200.008 kb on - strand, within GFF2152at 200.008 kb on - strand, within GFF2152at 200.008 kb on - strand, within GFF2152at 200.008 kb on - strand, within GFF2152at 200.008 kb on - strand, within GFF2152at 200.203 kb on + strand, within GFF2153at 200.203 kb on + strand, within GFF2153at 200.203 kb on + strand, within GFF2153at 200.203 kb on + strand, within GFF2153at 200.204 kb on - strand, within GFF2153at 200.266 kb on + strand, within GFF2153at 200.266 kb on + strand, within GFF2153at 200.266 kb on + strand, within GFF2153at 200.266 kb on + strand, within GFF2153at 200.267 kb on - strand, within GFF2153at 200.314 kb on + strand, within GFF2153at 200.314 kb on + strand, within GFF2153at 200.314 kb on + strand, within GFF2153at 200.533 kb on + strand, within GFF2153at 200.533 kb on + strand, within GFF2153at 200.533 kb on + strand, within GFF2153at 200.533 kb on + strand, within GFF2153at 200.533 kb on + strand, within GFF2153at 200.533 kb on + strand, within GFF2153at 200.533 kb on + strand, within GFF2153at 200.534 kb on - strand, within GFF2153at 200.534 kb on - strand, within GFF2153at 200.534 kb on - strand, within GFF2153at 200.534 kb on - strand, within GFF2153at 200.534 kb on - strand, within GFF2153at 200.534 kb on - strand, within GFF2153at 200.534 kb on - strand, within GFF2153at 200.534 kb on - strand, within GFF2153at 200.534 kb on - strand, within GFF2153at 200.607 kb on + strandat 200.608 kb on - strandat 200.608 kb on - strandat 200.608 kb on - strandat 200.608 kb on - strandat 200.608 kb on - strandat 200.617 kb on + strandat 200.617 kb on + strandat 200.617 kb on + strandat 200.617 kb on + strandat 200.618 kb on - strandat 200.618 kb on - strandat 200.693 kb on + strandat 200.693 kb on + strandat 200.694 kb on - strandat 201.229 kb on + strand, within GFF2154at 201.229 kb on + strand, within GFF2154at 201.230 kb on - strand, within GFF2154at 201.655 kb on + strand, within GFF2154at 201.655 kb on + strand, within GFF2154at 201.655 kb on + strand, within GFF2154at 201.655 kb on + strand, within GFF2154at 201.655 kb on + strand, within GFF2154at 201.655 kb on + strand, within GFF2154at 201.655 kb on + strand, within GFF2154at 201.655 kb on + strand, within GFF2154at 201.656 kb on - strand, within GFF2154at 201.656 kb on - strand, within GFF2154at 201.656 kb on - strand, within GFF2154at 201.656 kb on - strand, within GFF2154at 201.656 kb on - strand, within GFF2154at 201.656 kb on - strand, within GFF2154at 201.656 kb on - strand, within GFF2154at 201.656 kb on - strand, within GFF2154at 201.656 kb on - strand, within GFF2154at 201.762 kb on + strand, within GFF2154at 201.762 kb on + strand, within GFF2154at 201.763 kb on - strand, within GFF2154at 201.763 kb on - strand, within GFF2154at 201.763 kb on - strand, within GFF2154at 202.099 kb on + strand, within GFF2154at 202.099 kb on + strand, within GFF2154at 202.099 kb on + strand, within GFF2154at 202.099 kb on + strand, within GFF2154at 202.099 kb on + strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.100 kb on - strand, within GFF2154at 202.881 kb on + strandat 202.881 kb on + strandat 202.881 kb on + strandat 202.881 kb on + strandat 202.882 kb on - strandat 202.882 kb on - strandat 202.887 kb on + strandat 202.888 kb on - strandat 202.888 kb on - strandat 202.888 kb on - strandat 203.065 kb on + strandat 203.065 kb on + strandat 203.065 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.131 kb on + strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.132 kb on - strandat 203.133 kb on - strandat 203.685 kb on - strandat 203.685 kb on - strandat 203.885 kb on + strand, within GFF2155at 203.885 kb on + strand, within GFF2155at 203.885 kb on + strand, within GFF2155at 203.885 kb on + strand, within GFF2155at 203.886 kb on - strand, within GFF2155at 203.886 kb on - strand, within GFF2155at 203.886 kb on - strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.921 kb on + strand, within GFF2155at 203.922 kb on - strand, within GFF2155at 203.922 kb on - strand, within GFF2155

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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199,699 + +1.9
199,699 + -1.1
199,699 + -1.3
199,699 + +0.8
199,700 - +2.6
199,700 - +1.5
199,923 + GFF2152 0.61 -1.1
199,923 + GFF2152 0.61 -1.1
199,923 + GFF2152 0.61 +1.9
199,923 + GFF2152 0.61 +0.1
199,923 + GFF2152 0.61 -0.8
199,923 + GFF2152 0.61 +1.4
199,923 + GFF2152 0.61 -0.1
199,923 + GFF2152 0.61 -0.8
199,924 - GFF2152 0.61 -1.3
199,924 - GFF2152 0.61 -2.7
199,924 - GFF2152 0.61 -1.9
199,924 - GFF2152 0.61 -3.5
199,924 - GFF2152 0.61 +0.2
199,924 - GFF2152 0.61 +1.2
199,924 - GFF2152 0.61 -1.0
199,931 + GFF2152 0.63 -0.6
200,007 + GFF2152 0.84 -2.5
200,007 + GFF2152 0.84 -1.4
200,007 + GFF2152 0.84 -0.4
200,007 + GFF2152 0.84 +1.0
200,007 + GFF2152 0.84 -1.0
200,008 - GFF2152 0.84 +2.2
200,008 - GFF2152 0.84 -0.2
200,008 - GFF2152 0.84 -0.1
200,008 - GFF2152 0.84 +0.5
200,008 - GFF2152 0.84 -1.1
200,008 - GFF2152 0.84 -0.8
200,008 - GFF2152 0.84 -2.5
200,203 + GFF2153 0.22 +0.4
200,203 + GFF2153 0.22 +1.9
200,203 + GFF2153 0.22 -0.7
200,203 + GFF2153 0.22 -1.0
200,204 - GFF2153 0.22 -1.3
200,266 + GFF2153 0.34 -0.5
200,266 + GFF2153 0.34 +0.4
200,266 + GFF2153 0.34 +1.2
200,266 + GFF2153 0.34 +2.0
200,267 - GFF2153 0.34 -0.5
200,314 + GFF2153 0.43 +0.5
200,314 + GFF2153 0.43 +0.3
200,314 + GFF2153 0.43 -0.9
200,533 + GFF2153 0.84 +0.0
200,533 + GFF2153 0.84 -1.5
200,533 + GFF2153 0.84 +1.0
200,533 + GFF2153 0.84 +0.3
200,533 + GFF2153 0.84 -0.2
200,533 + GFF2153 0.84 +0.3
200,533 + GFF2153 0.84 +1.4
200,534 - GFF2153 0.84 -1.9
200,534 - GFF2153 0.84 -1.6
200,534 - GFF2153 0.84 -2.3
200,534 - GFF2153 0.84 -0.8
200,534 - GFF2153 0.84 +1.2
200,534 - GFF2153 0.84 +0.1
200,534 - GFF2153 0.84 -0.2
200,534 - GFF2153 0.84 -0.6
200,534 - GFF2153 0.84 -3.3
200,607 + -0.4
200,608 - +0.6
200,608 - -2.5
200,608 - +1.9
200,608 - -0.5
200,608 - +0.1
200,617 + -3.2
200,617 + -0.4
200,617 + -0.9
200,617 + -0.8
200,618 - -1.6
200,618 - -1.2
200,693 + +1.2
200,693 + -0.4
200,694 - -1.7
201,229 + GFF2154 0.25 +2.8
201,229 + GFF2154 0.25 +2.9
201,230 - GFF2154 0.25 -2.3
201,655 + GFF2154 0.43 +0.1
201,655 + GFF2154 0.43 +0.9
201,655 + GFF2154 0.43 +2.4
201,655 + GFF2154 0.43 +1.3
201,655 + GFF2154 0.43 -1.4
201,655 + GFF2154 0.43 -0.3
201,655 + GFF2154 0.43 +1.3
201,655 + GFF2154 0.43 -0.0
201,656 - GFF2154 0.43 +0.2
201,656 - GFF2154 0.43 +0.5
201,656 - GFF2154 0.43 -4.2
201,656 - GFF2154 0.43 +1.0
201,656 - GFF2154 0.43 -0.4
201,656 - GFF2154 0.43 -1.2
201,656 - GFF2154 0.43 -0.4
201,656 - GFF2154 0.43 -0.2
201,656 - GFF2154 0.43 -1.6
201,762 + GFF2154 0.48 +1.3
201,762 + GFF2154 0.48 -1.0
201,763 - GFF2154 0.48 -0.4
201,763 - GFF2154 0.48 +0.9
201,763 - GFF2154 0.48 -2.6
202,099 + GFF2154 0.62 -2.3
202,099 + GFF2154 0.62 +3.9
202,099 + GFF2154 0.62 +0.9
202,099 + GFF2154 0.62 +1.4
202,099 + GFF2154 0.62 +0.5
202,100 - GFF2154 0.62 +0.9
202,100 - GFF2154 0.62 +0.5
202,100 - GFF2154 0.62 +1.4
202,100 - GFF2154 0.62 +2.3
202,100 - GFF2154 0.62 -0.7
202,100 - GFF2154 0.62 +1.6
202,100 - GFF2154 0.62 -1.0
202,100 - GFF2154 0.62 -0.6
202,100 - GFF2154 0.62 +1.0
202,100 - GFF2154 0.62 -2.3
202,100 - GFF2154 0.62 -0.2
202,100 - GFF2154 0.62 +1.0
202,100 - GFF2154 0.62 +2.1
202,881 + -2.1
202,881 + +0.3
202,881 + -2.6
202,881 + +2.2
202,882 - +1.1
202,882 - +1.2
202,887 + +1.1
202,888 - +1.2
202,888 - +1.4
202,888 - +0.2
203,065 + +0.4
203,065 + -0.9
203,065 + -2.2
203,131 + +0.9
203,131 + +0.2
203,131 + -1.8
203,131 + -0.1
203,131 + -0.8
203,131 + -1.4
203,131 + -2.3
203,131 + +2.2
203,131 + +0.2
203,131 + -0.2
203,131 + -0.2
203,131 + +1.5
203,131 + -1.0
203,131 + -1.0
203,132 - -0.6
203,132 - -2.1
203,132 - -0.3
203,132 - +0.5
203,132 - -0.8
203,132 - -0.0
203,132 - -2.4
203,132 - +0.5
203,133 - +2.2
203,685 - +1.4
203,685 - +0.7
203,885 + GFF2155 0.12 +1.2
203,885 + GFF2155 0.12 -1.4
203,885 + GFF2155 0.12 -1.1
203,885 + GFF2155 0.12 +2.0
203,886 - GFF2155 0.12 -2.2
203,886 - GFF2155 0.12 -1.3
203,886 - GFF2155 0.12 -3.0
203,921 + GFF2155 0.12 -1.0
203,921 + GFF2155 0.12 -2.5
203,921 + GFF2155 0.12 -0.6
203,921 + GFF2155 0.12 -1.1
203,921 + GFF2155 0.12 -0.6
203,921 + GFF2155 0.12 -2.2
203,922 - GFF2155 0.12 -0.8
203,922 - GFF2155 0.12 +0.3

Or see this region's nucleotide sequence