Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2134 and GFF2135 are separated by 22 nucleotides GFF2135 and GFF2136 overlap by 4 nucleotides GFF2136 and GFF2137 overlap by 4 nucleotides
GFF2134 - probable iron-sulfur binding protein YPO1417, at 183,331 to 184,212
GFF2134
GFF2135 - D-ribose pyranase (EC 5.4.99.62), at 184,235 to 184,627
GFF2135
GFF2136 - Ribokinase (EC 2.7.1.15), at 184,624 to 185,589
GFF2136
GFF2137 - Ribose operon repressor, at 185,586 to 186,683
GFF2137
Position (kb) 184
185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 183.649 kb on + strand, within GFF2134 at 183.812 kb on - strand, within GFF2134 at 184.090 kb on + strand, within GFF2134 at 184.198 kb on + strand at 184.198 kb on + strand at 184.198 kb on + strand at 184.199 kb on - strand at 184.199 kb on - strand at 184.292 kb on - strand, within GFF2135 at 184.292 kb on - strand, within GFF2135 at 184.741 kb on + strand, within GFF2136 at 184.742 kb on - strand, within GFF2136 at 185.004 kb on - strand, within GFF2136 at 185.203 kb on + strand, within GFF2136 at 185.204 kb on - strand, within GFF2136 at 185.204 kb on - strand, within GFF2136 at 185.448 kb on + strand, within GFF2136 at 185.448 kb on + strand, within GFF2136 at 185.448 kb on + strand, within GFF2136 at 185.828 kb on - strand, within GFF2137 at 186.365 kb on - strand, within GFF2137 at 186.415 kb on + strand, within GFF2137 at 186.466 kb on + strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.467 kb on - strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.550 kb on + strand, within GFF2137 at 186.551 kb on - strand, within GFF2137 at 186.551 kb on - strand, within GFF2137
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 183,649 + GFF2134 0.36 -1.9 183,812 - GFF2134 0.55 -0.9 184,090 + GFF2134 0.86 +0.5 184,198 + +0.9 184,198 + -2.1 184,198 + -1.2 184,199 - +1.2 184,199 - +0.2 184,292 - GFF2135 0.15 -0.4 184,292 - GFF2135 0.15 +0.2 184,741 + GFF2136 0.12 -2.3 184,742 - GFF2136 0.12 +0.4 185,004 - GFF2136 0.39 -3.1 185,203 + GFF2136 0.60 -0.1 185,204 - GFF2136 0.60 -1.6 185,204 - GFF2136 0.60 -1.3 185,448 + GFF2136 0.85 -1.1 185,448 + GFF2136 0.85 -1.8 185,448 + GFF2136 0.85 +1.2 185,828 - GFF2137 0.22 -2.9 186,365 - GFF2137 0.71 +0.2 186,415 + GFF2137 0.76 -3.4 186,466 + GFF2137 0.80 -3.5 186,467 - GFF2137 0.80 -0.6 186,467 - GFF2137 0.80 -2.0 186,467 - GFF2137 0.80 -1.5 186,550 + GFF2137 0.88 -2.0 186,550 + GFF2137 0.88 -2.5 186,550 + GFF2137 0.88 -1.9 186,551 - GFF2137 0.88 +0.3 186,551 - GFF2137 0.88 -0.1
Or see this region's nucleotide sequence