Strain Fitness in Variovorax sp. SCN45 around GFF2045

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
92,346	+				+1.2
92,347	-				-2.4
92,347	-				-1.1
92,522	+		GFF2044	0.22	-2.2
92,522	+		GFF2044	0.22	+0.7
92,523	-		GFF2044	0.22	-0.3
92,583	+		GFF2044	0.30	-1.1
92,882	+		GFF2044	0.68	-0.6
92,882	+		GFF2044	0.68	-0.7
92,883	-		GFF2044	0.68	+1.6
92,883	-		GFF2044	0.68	-0.5
92,883	-		GFF2044	0.68	-2.0
92,883	-		GFF2044	0.68	+3.0
92,906	+		GFF2044	0.71	+1.6
92,921	+		GFF2044	0.73	-1.5
92,921	+		GFF2044	0.73	-0.8
92,922	-		GFF2044	0.73	-0.7
92,922	-		GFF2044	0.73	+0.4
92,922	-		GFF2044	0.73	-2.2
92,922	-		GFF2044	0.73	-1.7
92,922	-		GFF2044	0.73	-1.5
92,978	+		GFF2044	0.80	-0.9
92,979	-		GFF2044	0.80	-0.8
92,979	-		GFF2044	0.80	+0.2
92,979	-		GFF2044	0.80	-0.1
92,979	-		GFF2044	0.80	+2.2
92,981	+		GFF2044	0.80	-1.7
92,982	-		GFF2044	0.81	+0.0
93,113	+				-1.8
93,113	+				+0.4
93,114	-				-0.4
93,114	-				+0.4
93,114	-				-1.2
93,114	-				-1.8
93,114	-				-3.4
93,114	-				-0.0
93,241	-				-3.5
93,363	+		GFF2045	0.13	-0.7
93,363	+		GFF2045	0.13	-0.8
93,363	+		GFF2045	0.13	-3.2
93,363	+		GFF2045	0.13	+2.9
93,364	-		GFF2045	0.13	-1.7
93,364	-		GFF2045	0.13	-0.6
93,364	-		GFF2045	0.13	-2.7
93,364	-		GFF2045	0.13	-0.9
93,364	-		GFF2045	0.13	-0.7
93,364	-		GFF2045	0.13	-1.6
93,364	-		GFF2045	0.13	-1.6
93,396	+		GFF2045	0.15	-1.8
93,396	+		GFF2045	0.15	-0.8
93,687	+		GFF2045	0.33	-1.1
93,687	+		GFF2045	0.33	+1.5
93,687	+		GFF2045	0.33	-1.8
93,687	+		GFF2045	0.33	-1.9
93,688	-		GFF2045	0.33	-2.5
93,688	-		GFF2045	0.33	+0.2
93,792	+		GFF2045	0.39	-0.5
93,792	+		GFF2045	0.39	+0.2
93,792	+		GFF2045	0.39	+0.9
93,792	+		GFF2045	0.39	-1.9
93,793	-		GFF2045	0.40	-0.3
93,793	-		GFF2045	0.40	-1.1
93,793	-		GFF2045	0.40	-2.0
93,793	-		GFF2045	0.40	-1.3
93,793	-		GFF2045	0.40	+0.9
93,793	-		GFF2045	0.40	-2.2
94,269	-		GFF2045	0.69	-1.1
94,488	+		GFF2045	0.82	+0.2
94,488	+		GFF2045	0.82	+1.2
94,488	+		GFF2045	0.82	-1.4
94,488	+		GFF2045	0.82	-1.2
94,552	-		GFF2045	0.86	+1.4
94,552	-		GFF2045	0.86	-2.1
94,552	-		GFF2045	0.86	-1.1
94,896	+				-0.4
94,897	-				-0.1
94,966	+		GFF2046	0.16	-0.1
94,966	+		GFF2046	0.16	-0.2
94,966	+		GFF2046	0.16	-2.3
94,966	+		GFF2046	0.16	-0.8
94,967	-		GFF2046	0.16	-1.1
95,246	+		GFF2046	0.62	-0.8
95,247	-		GFF2046	0.62	+0.3
95,464	-				-0.7
95,627	+		GFF2047	0.14	-0.9
95,628	-		GFF2047	0.14	-1.1
95,628	-		GFF2047	0.14	-1.1
95,771	+		GFF2047	0.28	+1.8
95,771	+		GFF2047	0.28	-0.9
95,771	+		GFF2047	0.28	+0.5
95,772	-		GFF2047	0.28	+0.3
95,772	-		GFF2047	0.28	+0.8
95,772	-		GFF2047	0.28	-2.0