Strain Fitness in Variovorax sp. SCN45 around GFF202

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF201 and GFF202 are separated by 126 nucleotidesGFF202 and GFF203 are separated by 21 nucleotidesGFF203 and GFF204 are separated by 247 nucleotides GFF201 - Probable ferredoxin oxidoreductase oxidoreductase protein (EC 1.-.-.- ), at 228,751 to 229,740 GFF201 GFF202 - Transcriptional regulator, LysR family, at 229,867 to 230,781 GFF202 GFF203 - hypothetical protein, at 230,803 to 231,339 GFF203 GFF204 - hypothetical protein, at 231,587 to 232,216 GFF204 Position (kb) 229 230 231Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 229.020 kb on - strand, within GFF201at 229.021 kb on + strand, within GFF201at 229.021 kb on + strand, within GFF201at 229.022 kb on - strand, within GFF201at 229.022 kb on - strand, within GFF201at 229.169 kb on + strand, within GFF201at 229.170 kb on - strand, within GFF201at 229.170 kb on - strand, within GFF201at 229.230 kb on + strand, within GFF201at 229.350 kb on - strand, within GFF201at 229.350 kb on - strand, within GFF201at 229.535 kb on + strand, within GFF201at 229.535 kb on + strand, within GFF201at 229.536 kb on - strand, within GFF201at 229.643 kb on + strandat 229.644 kb on - strandat 229.644 kb on - strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.726 kb on + strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 229.727 kb on - strandat 230.090 kb on - strand, within GFF202at 230.090 kb on - strand, within GFF202at 230.194 kb on + strand, within GFF202at 230.194 kb on + strand, within GFF202at 230.195 kb on - strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.380 kb on + strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.381 kb on - strand, within GFF202at 230.857 kb on + strand, within GFF203at 230.857 kb on + strand, within GFF203at 230.857 kb on + strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.858 kb on - strand, within GFF203at 230.942 kb on + strand, within GFF203at 230.942 kb on + strand, within GFF203at 230.943 kb on - strand, within GFF203at 230.943 kb on - strand, within GFF203at 231.086 kb on + strand, within GFF203at 231.087 kb on - strand, within GFF203at 231.087 kb on - strand, within GFF203at 231.087 kb on - strand, within GFF203at 231.686 kb on + strand, within GFF204at 231.686 kb on + strand, within GFF204at 231.687 kb on - strand, within GFF204at 231.687 kb on - strand, within GFF204at 231.687 kb on - strand, within GFF204at 231.716 kb on + strand, within GFF204at 231.716 kb on + strand, within GFF204at 231.717 kb on - strand, within GFF204at 231.717 kb on - strand, within GFF204at 231.717 kb on - strand, within GFF204

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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229,020 - GFF201 0.27 +0.3
229,021 + GFF201 0.27 -1.5
229,021 + GFF201 0.27 +0.7
229,022 - GFF201 0.27 +0.2
229,022 - GFF201 0.27 -0.6
229,169 + GFF201 0.42 -2.0
229,170 - GFF201 0.42 +1.0
229,170 - GFF201 0.42 -1.9
229,230 + GFF201 0.48 -1.0
229,350 - GFF201 0.61 +1.3
229,350 - GFF201 0.61 -2.9
229,535 + GFF201 0.79 +0.7
229,535 + GFF201 0.79 +0.9
229,536 - GFF201 0.79 +0.0
229,643 + +2.3
229,644 - -1.3
229,644 - +1.7
229,726 + -0.7
229,726 + +2.0
229,726 + -0.7
229,726 + -1.8
229,726 + -0.2
229,726 + +2.0
229,726 + +0.7
229,726 + +0.4
229,726 + -2.6
229,726 + -1.1
229,726 + -1.1
229,726 + +2.5
229,726 + +1.4
229,726 + -0.3
229,726 + +1.4
229,726 + -3.5
229,727 - -2.8
229,727 - -1.1
229,727 - +2.0
229,727 - -1.9
229,727 - -0.0
229,727 - -2.3
229,727 - -0.8
229,727 - -1.1
229,727 - -2.1
229,727 - -2.3
229,727 - -1.9
229,727 - -0.1
229,727 - -2.0
229,727 - -1.8
229,727 - +0.1
229,727 - +0.9
229,727 - -1.3
229,727 - -0.1
229,727 - -0.0
229,727 - -1.0
229,727 - -0.7
229,727 - +0.7
229,727 - +0.9
230,090 - GFF202 0.24 -0.2
230,090 - GFF202 0.24 -0.2
230,194 + GFF202 0.36 -0.3
230,194 + GFF202 0.36 -0.1
230,195 - GFF202 0.36 -1.8
230,380 + GFF202 0.56 -2.0
230,380 + GFF202 0.56 +0.2
230,380 + GFF202 0.56 +0.6
230,380 + GFF202 0.56 -0.4
230,380 + GFF202 0.56 -0.9
230,380 + GFF202 0.56 -1.2
230,380 + GFF202 0.56 +0.1
230,380 + GFF202 0.56 +0.9
230,381 - GFF202 0.56 +0.4
230,381 - GFF202 0.56 -1.7
230,381 - GFF202 0.56 -0.5
230,381 - GFF202 0.56 +0.5
230,381 - GFF202 0.56 +2.7
230,381 - GFF202 0.56 -1.7
230,381 - GFF202 0.56 +1.1
230,857 + GFF203 0.10 -1.8
230,857 + GFF203 0.10 +0.2
230,857 + GFF203 0.10 +0.3
230,858 - GFF203 0.10 -0.1
230,858 - GFF203 0.10 -0.7
230,858 - GFF203 0.10 -1.4
230,858 - GFF203 0.10 -2.4
230,858 - GFF203 0.10 +0.3
230,942 + GFF203 0.26 -1.9
230,942 + GFF203 0.26 +0.9
230,943 - GFF203 0.26 -1.5
230,943 - GFF203 0.26 -0.5
231,086 + GFF203 0.53 -2.0
231,087 - GFF203 0.53 -0.4
231,087 - GFF203 0.53 -0.1
231,087 - GFF203 0.53 -1.7
231,686 + GFF204 0.16 +1.0
231,686 + GFF204 0.16 -2.0
231,687 - GFF204 0.16 -0.2
231,687 - GFF204 0.16 -3.5
231,687 - GFF204 0.16 +0.4
231,716 + GFF204 0.20 +2.9
231,716 + GFF204 0.20 -0.8
231,717 - GFF204 0.21 +0.1
231,717 - GFF204 0.21 +2.8
231,717 - GFF204 0.21 -2.8

Or see this region's nucleotide sequence