Strain Fitness in Variovorax sp. SCN45 around GFF1994

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
35,519	+		GFF1993	0.31	+0.7
35,520	-		GFF1993	0.31	+1.1
35,606	+		GFF1993	0.38	-3.1
35,607	-		GFF1993	0.39	-0.6
35,657	+		GFF1993	0.43	-0.1
35,658	-		GFF1993	0.43	-0.7
35,658	-		GFF1993	0.43	-1.4
35,658	-		GFF1993	0.43	-3.6
35,658	-		GFF1993	0.43	+0.5
35,658	-		GFF1993	0.43	+2.0
35,658	-		GFF1993	0.43	+0.2
36,330	+				+1.5
36,330	+				-0.3
36,330	+				+1.6
36,330	+				-1.9
36,330	+				-1.9
36,330	+				+1.2
36,330	+				-2.3
36,331	-				-1.2
36,331	-				-0.8
36,331	-				-1.7
36,331	-				+0.2
36,332	+				-1.6
36,332	+				-0.6
36,332	+				-2.3
36,333	-				-0.1
36,333	-				-1.4
36,333	-				-0.4
36,333	-				-2.6
36,333	-				-0.4
36,333	-				-0.2
36,333	-				-1.2
36,389	+				+0.6
36,397	+				+0.5
36,397	+				+1.1
36,398	-				-3.1
36,405	+				-3.0
36,629	-		GFF1994	0.17	-0.8
36,629	-		GFF1994	0.17	-3.6
36,772	+		GFF1994	0.28	+0.4
36,772	+		GFF1994	0.28	+0.4
36,772	+		GFF1994	0.28	-1.6
36,772	+		GFF1994	0.28	-0.8
36,826	+		GFF1994	0.32	-0.7
36,898	+		GFF1994	0.38	-3.5
36,898	+		GFF1994	0.38	-0.7
36,899	-		GFF1994	0.38	-3.7
36,899	-		GFF1994	0.38	+0.2
36,914	-		GFF1994	0.39	+2.5
37,006	+		GFF1994	0.47	-1.2
37,007	-		GFF1994	0.47	-1.6
37,007	-		GFF1994	0.47	-0.4
37,289	-		GFF1994	0.69	-4.0
37,451	-		GFF1994	0.82	-2.0
37,453	+		GFF1994	0.82	-3.1
37,453	+		GFF1994	0.82	-2.2
37,453	+		GFF1994	0.82	-2.0
37,453	+		GFF1994	0.82	+0.2
37,454	-		GFF1994	0.83	+0.2
37,454	-		GFF1994	0.83	-1.8
37,517	-		GFF1994	0.88	+1.2
37,573	+				+0.2
37,573	+				-0.9
37,573	+				+0.9
37,573	+				-0.1
37,594	+				+0.2
37,594	+				+0.2
37,594	+				-1.7
37,594	+				-2.4
37,595	-				-0.4
37,627	+				-1.2
37,627	+				+0.7
37,627	+				-2.5
37,627	+				+0.9
37,627	+				-1.1
37,627	+				+1.2
37,628	-				+1.4
37,628	-				+1.1
37,628	-				-2.6
37,628	-				-0.4
37,628	-				-2.8
37,628	-				+0.5
37,628	-				-1.0
37,628	-				-2.7
37,669	+				-0.2
37,669	+				-0.6
37,669	+				+0.9
37,669	+				-1.2
37,669	+				+2.2
37,670	-				-0.1
37,670	-				-1.2
37,670	-				-1.4
37,670	-				-0.1
37,670	-				+0.5
37,865	+		GFF1995	0.13	+0.3
37,866	-		GFF1995	0.13	-1.5
37,910	+		GFF1995	0.17	-1.9
37,910	+		GFF1995	0.17	+2.2
37,911	-		GFF1995	0.17	+0.2
38,016	-		GFF1995	0.26	+2.2
38,156	+		GFF1995	0.38	-2.6
38,156	+		GFF1995	0.38	+1.4
38,156	+		GFF1995	0.38	-1.6
38,157	-		GFF1995	0.39	-0.8
38,157	-		GFF1995	0.39	+1.2
38,157	-		GFF1995	0.39	+0.2
38,292	-		GFF1995	0.50	-0.9
38,292	-		GFF1995	0.50	+2.6
38,292	-		GFF1995	0.50	-1.1
38,409	-		GFF1995	0.61	-1.8
38,409	-		GFF1995	0.61	+0.8
38,504	+		GFF1995	0.69	+3.9
38,505	-		GFF1995	0.69	-3.1
38,505	-		GFF1995	0.69	-2.0