Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1926 and GFF1927 overlap by 4 nucleotides GFF1927 and GFF1928 are separated by 100 nucleotides GFF1928 and GFF1929 are separated by 85 nucleotides
GFF1926 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 606,451 to 607,458
GFF1926
GFF1927 - Alkanesulfonates-binding protein, at 607,455 to 608,435
GFF1927
GFF1928 - Fumarylacetoacetate hydrolase family protein, at 608,536 to 609,225
GFF1928
GFF1929 - Transcriptional regulator, AraC family, at 609,311 to 610,228
GFF1929
Position (kb) 607
608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 606.673 kb on + strand, within GFF1926 at 606.674 kb on - strand, within GFF1926 at 606.674 kb on - strand, within GFF1926 at 607.051 kb on + strand, within GFF1926 at 607.051 kb on + strand, within GFF1926 at 607.082 kb on - strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.114 kb on + strand, within GFF1926 at 607.115 kb on - strand, within GFF1926 at 607.115 kb on - strand, within GFF1926 at 607.220 kb on - strand, within GFF1926 at 607.220 kb on - strand, within GFF1926 at 607.265 kb on - strand, within GFF1926 at 607.265 kb on - strand, within GFF1926 at 607.366 kb on + strand at 607.367 kb on - strand at 607.654 kb on - strand, within GFF1927 at 607.911 kb on + strand, within GFF1927 at 607.911 kb on + strand, within GFF1927 at 607.912 kb on - strand, within GFF1927 at 607.912 kb on - strand, within GFF1927 at 608.044 kb on - strand, within GFF1927 at 608.118 kb on + strand, within GFF1927 at 608.119 kb on - strand, within GFF1927 at 608.119 kb on - strand, within GFF1927 at 608.464 kb on + strand at 608.464 kb on + strand at 608.465 kb on - strand at 608.470 kb on - strand at 608.470 kb on - strand at 608.490 kb on + strand at 608.491 kb on - strand at 608.545 kb on + strand at 608.545 kb on + strand at 608.546 kb on - strand at 608.546 kb on - strand at 608.638 kb on + strand, within GFF1928 at 608.638 kb on + strand, within GFF1928 at 608.638 kb on + strand, within GFF1928 at 608.846 kb on - strand, within GFF1928 at 609.085 kb on + strand, within GFF1928 at 609.271 kb on - strand at 609.271 kb on - strand at 609.273 kb on + strand at 609.273 kb on + strand at 609.344 kb on + strand at 609.344 kb on + strand at 609.344 kb on + strand at 609.344 kb on + strand at 609.345 kb on - strand at 609.345 kb on - strand at 609.345 kb on - strand at 609.434 kb on + strand, within GFF1929 at 609.435 kb on - strand, within GFF1929 at 609.435 kb on - strand, within GFF1929 at 609.435 kb on - strand, within GFF1929
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 606,673 + GFF1926 0.22 -1.1 606,674 - GFF1926 0.22 -0.3 606,674 - GFF1926 0.22 +3.8 607,051 + GFF1926 0.60 +1.3 607,051 + GFF1926 0.60 +1.3 607,082 - GFF1926 0.63 -0.3 607,114 + GFF1926 0.66 +0.4 607,114 + GFF1926 0.66 -3.7 607,114 + GFF1926 0.66 -1.1 607,115 - GFF1926 0.66 -1.1 607,115 - GFF1926 0.66 -0.8 607,220 - GFF1926 0.76 -0.6 607,220 - GFF1926 0.76 -1.6 607,265 - GFF1926 0.81 -0.5 607,265 - GFF1926 0.81 +0.0 607,366 + -2.8 607,367 - +0.1 607,654 - GFF1927 0.20 -0.1 607,911 + GFF1927 0.46 -0.1 607,911 + GFF1927 0.46 -0.4 607,912 - GFF1927 0.47 +1.0 607,912 - GFF1927 0.47 -0.3 608,044 - GFF1927 0.60 -0.9 608,118 + GFF1927 0.68 -1.9 608,119 - GFF1927 0.68 -0.8 608,119 - GFF1927 0.68 -0.6 608,464 + +0.1 608,464 + +0.2 608,465 - -1.7 608,470 - -1.5 608,470 - -2.1 608,490 + -2.1 608,491 - -0.1 608,545 + +0.7 608,545 + -0.9 608,546 - +0.7 608,546 - -0.5 608,638 + GFF1928 0.15 +1.5 608,638 + GFF1928 0.15 +0.3 608,638 + GFF1928 0.15 -0.2 608,846 - GFF1928 0.45 -1.3 609,085 + GFF1928 0.80 -0.2 609,271 - +0.8 609,271 - +1.7 609,273 + -1.6 609,273 + -1.7 609,344 + +0.4 609,344 + +0.7 609,344 + +0.2 609,344 + -1.4 609,345 - -0.1 609,345 - +0.9 609,345 - -2.0 609,434 + GFF1929 0.13 +0.9 609,435 - GFF1929 0.14 -0.6 609,435 - GFF1929 0.14 -1.1 609,435 - GFF1929 0.14 -0.4
Or see this region's nucleotide sequence