Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1920 and GFF1921 overlap by 4 nucleotides GFF1921 and GFF1922 overlap by 4 nucleotides GFF1922 and GFF1923 are separated by 83 nucleotides
GFF1920 - Cysteine dioxygenase (EC 1.13.11.20), at 600,472 to 601,077
GFF1920
GFF1921 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 601,074 to 602,063
GFF1921
GFF1922 - Acyl-CoA dehydrogenase, at 602,060 to 603,304
GFF1922
GFF1923 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 603,388 to 604,416
GFF1923
Position (kb) 602
603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 601.274 kb on - strand, within GFF1921 at 601.285 kb on + strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.286 kb on - strand, within GFF1921 at 601.468 kb on + strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.469 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.472 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.595 kb on - strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.603 kb on + strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.604 kb on - strand, within GFF1921 at 601.862 kb on - strand, within GFF1921 at 602.131 kb on + strand at 602.131 kb on + strand at 602.131 kb on + strand at 602.132 kb on - strand at 602.132 kb on - strand at 602.257 kb on - strand, within GFF1922 at 602.478 kb on + strand, within GFF1922 at 602.478 kb on + strand, within GFF1922 at 602.788 kb on - strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.994 kb on + strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 602.995 kb on - strand, within GFF1922 at 603.091 kb on - strand, within GFF1922 at 603.358 kb on - strand at 603.549 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.553 kb on + strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.554 kb on - strand, within GFF1923 at 603.608 kb on - strand, within GFF1923 at 603.841 kb on + strand, within GFF1923 at 603.842 kb on - strand, within GFF1923 at 603.842 kb on - strand, within GFF1923 at 603.865 kb on + strand, within GFF1923 at 603.866 kb on - strand, within GFF1923 at 603.868 kb on + strand, within GFF1923 at 603.868 kb on + strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.869 kb on - strand, within GFF1923 at 603.988 kb on + strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.989 kb on - strand, within GFF1923 at 603.995 kb on - strand, within GFF1923 at 604.078 kb on + strand, within GFF1923 at 604.078 kb on + strand, within GFF1923 at 604.079 kb on - strand, within GFF1923 at 604.079 kb on - strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.186 kb on + strand, within GFF1923 at 604.187 kb on - strand, within GFF1923 at 604.187 kb on - strand, within GFF1923
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 601,274 - GFF1921 0.20 -0.6 601,285 + GFF1921 0.21 -0.1 601,286 - GFF1921 0.21 -3.1 601,286 - GFF1921 0.21 -1.7 601,468 + GFF1921 0.40 +1.7 601,469 - GFF1921 0.40 -1.4 601,469 - GFF1921 0.40 +1.8 601,469 - GFF1921 0.40 -0.1 601,469 - GFF1921 0.40 -1.4 601,469 - GFF1921 0.40 -2.7 601,472 - GFF1921 0.40 -0.1 601,472 - GFF1921 0.40 +3.9 601,595 - GFF1921 0.53 +0.3 601,595 - GFF1921 0.53 -0.7 601,603 + GFF1921 0.53 +0.1 601,603 + GFF1921 0.53 +1.3 601,603 + GFF1921 0.53 +1.4 601,604 - GFF1921 0.54 +1.3 601,604 - GFF1921 0.54 -1.5 601,862 - GFF1921 0.80 -0.5 602,131 + +1.0 602,131 + +0.2 602,131 + -0.9 602,132 - -0.7 602,132 - -1.4 602,257 - GFF1922 0.16 -1.3 602,478 + GFF1922 0.34 +0.5 602,478 + GFF1922 0.34 +0.5 602,788 - GFF1922 0.58 +1.6 602,994 + GFF1922 0.75 -0.9 602,994 + GFF1922 0.75 -0.3 602,994 + GFF1922 0.75 -0.3 602,995 - GFF1922 0.75 -0.3 602,995 - GFF1922 0.75 +0.9 602,995 - GFF1922 0.75 -2.0 602,995 - GFF1922 0.75 -0.2 603,091 - GFF1922 0.83 +1.5 603,358 - +2.3 603,549 + GFF1923 0.16 -2.6 603,553 + GFF1923 0.16 +1.9 603,553 + GFF1923 0.16 +0.7 603,553 + GFF1923 0.16 -2.7 603,553 + GFF1923 0.16 +0.1 603,553 + GFF1923 0.16 -1.3 603,553 + GFF1923 0.16 -1.4 603,554 - GFF1923 0.16 -1.7 603,554 - GFF1923 0.16 -2.3 603,554 - GFF1923 0.16 -0.7 603,554 - GFF1923 0.16 -2.8 603,554 - GFF1923 0.16 -1.7 603,608 - GFF1923 0.21 -2.0 603,841 + GFF1923 0.44 +0.3 603,842 - GFF1923 0.44 -2.0 603,842 - GFF1923 0.44 +1.8 603,865 + GFF1923 0.46 -3.6 603,866 - GFF1923 0.46 +0.1 603,868 + GFF1923 0.47 +0.2 603,868 + GFF1923 0.47 -1.2 603,869 - GFF1923 0.47 -1.3 603,869 - GFF1923 0.47 +1.4 603,869 - GFF1923 0.47 -0.5 603,988 + GFF1923 0.58 -0.7 603,989 - GFF1923 0.58 -1.9 603,989 - GFF1923 0.58 -0.1 603,989 - GFF1923 0.58 +0.2 603,989 - GFF1923 0.58 -1.7 603,989 - GFF1923 0.58 -0.8 603,995 - GFF1923 0.59 +1.6 604,078 + GFF1923 0.67 -0.7 604,078 + GFF1923 0.67 +0.4 604,079 - GFF1923 0.67 +0.8 604,079 - GFF1923 0.67 -1.4 604,186 + GFF1923 0.78 -0.9 604,186 + GFF1923 0.78 +1.0 604,186 + GFF1923 0.78 +0.4 604,186 + GFF1923 0.78 +0.5 604,186 + GFF1923 0.78 -1.6 604,186 + GFF1923 0.78 +1.0 604,187 - GFF1923 0.78 +0.3 604,187 - GFF1923 0.78 -0.6
Or see this region's nucleotide sequence