Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1907 and GFF1908 are separated by 120 nucleotides GFF1908 and GFF1909 are separated by 46 nucleotides GFF1909 and GFF1910 are separated by 17 nucleotides
GFF1907 - Transcriptional regulator, AraC family, at 588,027 to 588,974
GFF1907
GFF1908 - Short-chain dehydrogenases of various substrate specificities, at 589,095 to 589,904
GFF1908
GFF1909 - FIG00537389: hypothetical protein, at 589,951 to 590,607
GFF1909
GFF1910 - no description, at 590,625 to 590,879
GFF1910
Position (kb) 589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 588.129 kb on + strand, within GFF1907 at 588.129 kb on + strand, within GFF1907 at 588.129 kb on + strand, within GFF1907 at 588.130 kb on - strand, within GFF1907 at 588.204 kb on + strand, within GFF1907 at 588.205 kb on - strand, within GFF1907 at 588.205 kb on - strand, within GFF1907 at 588.504 kb on + strand, within GFF1907 at 588.579 kb on + strand, within GFF1907 at 588.580 kb on - strand, within GFF1907 at 588.580 kb on - strand, within GFF1907 at 588.580 kb on - strand, within GFF1907 at 588.666 kb on + strand, within GFF1907 at 588.667 kb on - strand, within GFF1907 at 588.667 kb on - strand, within GFF1907 at 588.667 kb on - strand, within GFF1907 at 588.980 kb on + strand at 588.981 kb on - strand at 588.981 kb on - strand at 588.981 kb on - strand at 589.017 kb on + strand at 589.019 kb on + strand at 589.020 kb on - strand at 589.029 kb on - strand at 589.159 kb on - strand at 589.462 kb on - strand, within GFF1908 at 589.676 kb on + strand, within GFF1908 at 589.694 kb on - strand, within GFF1908 at 589.934 kb on + strand at 589.934 kb on + strand at 589.934 kb on + strand at 589.935 kb on - strand at 589.935 kb on - strand at 589.935 kb on - strand at 590.128 kb on + strand, within GFF1909 at 590.128 kb on + strand, within GFF1909 at 590.128 kb on + strand, within GFF1909 at 590.128 kb on + strand, within GFF1909 at 590.129 kb on - strand, within GFF1909 at 590.650 kb on + strand at 590.651 kb on - strand, within GFF1910 at 590.651 kb on - strand, within GFF1910
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 588,129 + GFF1907 0.11 -0.5 588,129 + GFF1907 0.11 +2.3 588,129 + GFF1907 0.11 +2.8 588,130 - GFF1907 0.11 +5.1 588,204 + GFF1907 0.19 -2.8 588,205 - GFF1907 0.19 -0.1 588,205 - GFF1907 0.19 -1.4 588,504 + GFF1907 0.50 -0.7 588,579 + GFF1907 0.58 -1.1 588,580 - GFF1907 0.58 +1.3 588,580 - GFF1907 0.58 +0.1 588,580 - GFF1907 0.58 -0.1 588,666 + GFF1907 0.67 +0.1 588,667 - GFF1907 0.68 -0.6 588,667 - GFF1907 0.68 -0.2 588,667 - GFF1907 0.68 +0.3 588,980 + -0.1 588,981 - -0.7 588,981 - -2.8 588,981 - +0.7 589,017 + +0.9 589,019 + -2.5 589,020 - -2.1 589,029 - +0.3 589,159 - -1.6 589,462 - GFF1908 0.45 -0.9 589,676 + GFF1908 0.72 -1.9 589,694 - GFF1908 0.74 +0.3 589,934 + -0.9 589,934 + -1.2 589,934 + -1.9 589,935 - -0.9 589,935 - -2.5 589,935 - -0.7 590,128 + GFF1909 0.27 +0.5 590,128 + GFF1909 0.27 -0.6 590,128 + GFF1909 0.27 -0.3 590,128 + GFF1909 0.27 +0.2 590,129 - GFF1909 0.27 -0.6 590,650 + -1.1 590,651 - GFF1910 0.10 +0.5 590,651 - GFF1910 0.10 -0.2
Or see this region's nucleotide sequence