Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1880 and GFF1881 overlap by 4 nucleotides GFF1881 and GFF1882 overlap by 4 nucleotides
GFF1880 - Previously called glutamate synthase [NADPH] small chain, at 553,381 to 555,180
GFF1880
GFF1881 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, gamma subunit (EC 1.2.7.-) / 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit (EC 1.2.7.-), at 555,177 to 557,003
GFF1881
GFF1882 - 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-), at 557,000 to 558,055
GFF1882
Position (kb) 555
556
557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 554.356 kb on + strand, within GFF1880 at 554.356 kb on + strand, within GFF1880 at 554.357 kb on - strand, within GFF1880 at 554.659 kb on + strand, within GFF1880 at 554.660 kb on - strand, within GFF1880 at 554.660 kb on - strand, within GFF1880 at 554.722 kb on + strand, within GFF1880 at 554.723 kb on - strand, within GFF1880 at 554.752 kb on + strand, within GFF1880 at 554.752 kb on + strand, within GFF1880 at 554.752 kb on + strand, within GFF1880 at 554.753 kb on - strand, within GFF1880 at 554.753 kb on - strand, within GFF1880 at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.022 kb on + strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.023 kb on - strand at 555.678 kb on + strand, within GFF1881 at 555.678 kb on + strand, within GFF1881 at 555.678 kb on + strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.679 kb on - strand, within GFF1881 at 555.849 kb on + strand, within GFF1881 at 555.850 kb on - strand, within GFF1881 at 555.850 kb on - strand, within GFF1881 at 555.876 kb on + strand, within GFF1881 at 555.876 kb on + strand, within GFF1881 at 555.921 kb on + strand, within GFF1881 at 555.922 kb on - strand, within GFF1881 at 555.922 kb on - strand, within GFF1881 at 556.101 kb on + strand, within GFF1881 at 556.101 kb on + strand, within GFF1881 at 556.102 kb on - strand, within GFF1881 at 556.203 kb on + strand, within GFF1881 at 556.204 kb on - strand, within GFF1881 at 556.392 kb on + strand, within GFF1881 at 556.393 kb on - strand, within GFF1881 at 556.393 kb on - strand, within GFF1881 at 556.453 kb on - strand, within GFF1881 at 556.453 kb on - strand, within GFF1881 at 556.521 kb on + strand, within GFF1881 at 556.521 kb on + strand, within GFF1881 at 556.521 kb on + strand, within GFF1881 at 556.522 kb on - strand, within GFF1881 at 556.522 kb on - strand, within GFF1881 at 556.551 kb on + strand, within GFF1881 at 556.552 kb on - strand, within GFF1881 at 556.561 kb on - strand, within GFF1881 at 556.581 kb on + strand, within GFF1881 at 556.582 kb on - strand, within GFF1881 at 556.582 kb on - strand, within GFF1881 at 556.582 kb on - strand, within GFF1881 at 556.582 kb on - strand, within GFF1881 at 556.587 kb on + strand, within GFF1881 at 556.587 kb on + strand, within GFF1881 at 556.587 kb on + strand, within GFF1881 at 556.588 kb on - strand, within GFF1881 at 556.588 kb on - strand, within GFF1881 at 556.588 kb on - strand, within GFF1881 at 556.689 kb on + strand, within GFF1881 at 556.690 kb on - strand, within GFF1881 at 557.006 kb on + strand at 557.006 kb on + strand at 557.006 kb on + strand at 557.006 kb on + strand at 557.007 kb on - strand at 557.007 kb on - strand at 557.007 kb on - strand at 557.075 kb on + strand at 557.075 kb on + strand at 557.076 kb on - strand at 557.222 kb on + strand, within GFF1882 at 557.223 kb on - strand, within GFF1882 at 557.223 kb on - strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.315 kb on + strand, within GFF1882 at 557.316 kb on - strand, within GFF1882 at 557.316 kb on - strand, within GFF1882 at 557.316 kb on - strand, within GFF1882 at 557.402 kb on + strand, within GFF1882 at 557.403 kb on - strand, within GFF1882 at 557.403 kb on - strand, within GFF1882 at 557.403 kb on - strand, within GFF1882 at 557.403 kb on - strand, within GFF1882 at 557.426 kb on + strand, within GFF1882 at 557.549 kb on + strand, within GFF1882 at 557.549 kb on + strand, within GFF1882 at 557.549 kb on + strand, within GFF1882 at 557.549 kb on + strand, within GFF1882 at 557.550 kb on - strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.690 kb on + strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.691 kb on - strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.876 kb on + strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.877 kb on - strand, within GFF1882 at 557.925 kb on - strand, within GFF1882
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 554,356 + GFF1880 0.54 +0.7 554,356 + GFF1880 0.54 +1.9 554,357 - GFF1880 0.54 +0.1 554,659 + GFF1880 0.71 +0.3 554,660 - GFF1880 0.71 +0.1 554,660 - GFF1880 0.71 -1.2 554,722 + GFF1880 0.74 +1.3 554,723 - GFF1880 0.75 -0.6 554,752 + GFF1880 0.76 +0.0 554,752 + GFF1880 0.76 +0.9 554,752 + GFF1880 0.76 -1.6 554,753 - GFF1880 0.76 -0.3 554,753 - GFF1880 0.76 -1.7 555,022 + -1.9 555,022 + -1.2 555,022 + -0.2 555,022 + +3.1 555,022 + +0.1 555,022 + -0.5 555,022 + +0.3 555,022 + -0.4 555,023 - -1.1 555,023 - -1.2 555,023 - +2.3 555,023 - +2.0 555,023 - -0.7 555,023 - -0.7 555,023 - -1.6 555,023 - -0.5 555,023 - -0.6 555,023 - -1.6 555,023 - -2.9 555,678 + GFF1881 0.27 +0.4 555,678 + GFF1881 0.27 -0.1 555,678 + GFF1881 0.27 +2.3 555,679 - GFF1881 0.27 -2.5 555,679 - GFF1881 0.27 +2.3 555,679 - GFF1881 0.27 -0.7 555,679 - GFF1881 0.27 -0.2 555,679 - GFF1881 0.27 -0.7 555,679 - GFF1881 0.27 -1.3 555,679 - GFF1881 0.27 -0.8 555,679 - GFF1881 0.27 +0.8 555,849 + GFF1881 0.37 +3.5 555,850 - GFF1881 0.37 +0.8 555,850 - GFF1881 0.37 +0.5 555,876 + GFF1881 0.38 +0.4 555,876 + GFF1881 0.38 +1.8 555,921 + GFF1881 0.41 +0.7 555,922 - GFF1881 0.41 -3.1 555,922 - GFF1881 0.41 -1.2 556,101 + GFF1881 0.51 -0.7 556,101 + GFF1881 0.51 -1.0 556,102 - GFF1881 0.51 +1.4 556,203 + GFF1881 0.56 -1.9 556,204 - GFF1881 0.56 +2.3 556,392 + GFF1881 0.67 +2.3 556,393 - GFF1881 0.67 +0.8 556,393 - GFF1881 0.67 -0.7 556,453 - GFF1881 0.70 -1.8 556,453 - GFF1881 0.70 +1.4 556,521 + GFF1881 0.74 +0.2 556,521 + GFF1881 0.74 -1.5 556,521 + GFF1881 0.74 -0.1 556,522 - GFF1881 0.74 -0.6 556,522 - GFF1881 0.74 -1.2 556,551 + GFF1881 0.75 -1.7 556,552 - GFF1881 0.75 +1.3 556,561 - GFF1881 0.76 +1.0 556,581 + GFF1881 0.77 -0.3 556,582 - GFF1881 0.77 -0.4 556,582 - GFF1881 0.77 -1.4 556,582 - GFF1881 0.77 +2.8 556,582 - GFF1881 0.77 -1.3 556,587 + GFF1881 0.77 -0.0 556,587 + GFF1881 0.77 -0.6 556,587 + GFF1881 0.77 -1.5 556,588 - GFF1881 0.77 +2.0 556,588 - GFF1881 0.77 +0.7 556,588 - GFF1881 0.77 -0.7 556,689 + GFF1881 0.83 +0.4 556,690 - GFF1881 0.83 +1.5 557,006 + -2.3 557,006 + +0.8 557,006 + +1.4 557,006 + +2.3 557,007 - -3.1 557,007 - -0.7 557,007 - -0.3 557,075 + -2.6 557,075 + -0.1 557,076 - +0.3 557,222 + GFF1882 0.21 +1.3 557,223 - GFF1882 0.21 +0.4 557,223 - GFF1882 0.21 +1.3 557,315 + GFF1882 0.30 +1.5 557,315 + GFF1882 0.30 -0.1 557,315 + GFF1882 0.30 -0.3 557,315 + GFF1882 0.30 -2.1 557,315 + GFF1882 0.30 +1.1 557,316 - GFF1882 0.30 +1.9 557,316 - GFF1882 0.30 -1.7 557,316 - GFF1882 0.30 -2.0 557,402 + GFF1882 0.38 +1.0 557,403 - GFF1882 0.38 -3.0 557,403 - GFF1882 0.38 -0.5 557,403 - GFF1882 0.38 -0.3 557,403 - GFF1882 0.38 -2.8 557,426 + GFF1882 0.40 +1.9 557,549 + GFF1882 0.52 +0.9 557,549 + GFF1882 0.52 +0.3 557,549 + GFF1882 0.52 +0.1 557,549 + GFF1882 0.52 -1.3 557,550 - GFF1882 0.52 -0.7 557,690 + GFF1882 0.65 -1.6 557,690 + GFF1882 0.65 -2.0 557,690 + GFF1882 0.65 +2.3 557,690 + GFF1882 0.65 -1.2 557,690 + GFF1882 0.65 -0.6 557,690 + GFF1882 0.65 +0.5 557,691 - GFF1882 0.65 -0.3 557,691 - GFF1882 0.65 +2.4 557,691 - GFF1882 0.65 +1.5 557,691 - GFF1882 0.65 -0.3 557,876 + GFF1882 0.83 -2.1 557,876 + GFF1882 0.83 +0.9 557,876 + GFF1882 0.83 -1.8 557,876 + GFF1882 0.83 +0.4 557,877 - GFF1882 0.83 +0.9 557,877 - GFF1882 0.83 +1.3 557,877 - GFF1882 0.83 +1.3 557,877 - GFF1882 0.83 -1.4 557,877 - GFF1882 0.83 +0.7 557,877 - GFF1882 0.83 +0.1 557,925 - GFF1882 0.88 -3.1
Or see this region's nucleotide sequence