Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1838 and GFF1839 are separated by 22 nucleotides GFF1839 and GFF1840 are separated by 174 nucleotides GFF1840 and GFF1841 are separated by 4 nucleotides
GFF1838 - Manganese transport protein MntH, at 505,659 to 506,912
GFF1838
GFF1839 - Integral membrane protein, at 506,935 to 507,714
GFF1839
GFF1840 - Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4), at 507,889 to 509,535
GFF1840
GFF1841 - Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4), at 509,540 to 512,008
GFF1841
Position (kb) 507
508
509
510 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 506.921 kb on + strand at 506.922 kb on - strand at 506.922 kb on - strand at 506.922 kb on - strand at 506.922 kb on - strand at 507.001 kb on + strand at 507.130 kb on + strand, within GFF1839 at 507.130 kb on + strand, within GFF1839 at 507.130 kb on + strand, within GFF1839 at 507.130 kb on + strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.427 kb on + strand, within GFF1839 at 507.427 kb on + strand, within GFF1839 at 507.427 kb on + strand, within GFF1839 at 507.427 kb on + strand, within GFF1839 at 507.428 kb on - strand, within GFF1839 at 507.428 kb on - strand, within GFF1839 at 507.539 kb on - strand, within GFF1839 at 507.578 kb on - strand, within GFF1839 at 507.578 kb on - strand, within GFF1839 at 507.578 kb on - strand, within GFF1839 at 507.773 kb on + strand at 507.774 kb on - strand at 507.774 kb on - strand at 507.774 kb on - strand at 507.782 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.817 kb on + strand at 508.357 kb on + strand, within GFF1840 at 508.357 kb on + strand, within GFF1840 at 508.358 kb on - strand, within GFF1840 at 508.358 kb on - strand, within GFF1840 at 508.561 kb on + strand, within GFF1840 at 508.561 kb on + strand, within GFF1840 at 508.561 kb on + strand, within GFF1840 at 508.562 kb on - strand, within GFF1840 at 508.562 kb on - strand, within GFF1840 at 508.595 kb on + strand, within GFF1840 at 508.726 kb on + strand, within GFF1840 at 508.726 kb on + strand, within GFF1840 at 508.726 kb on + strand, within GFF1840 at 508.726 kb on + strand, within GFF1840 at 508.726 kb on + strand, within GFF1840 at 508.726 kb on + strand, within GFF1840 at 508.727 kb on - strand, within GFF1840 at 508.727 kb on - strand, within GFF1840 at 508.727 kb on - strand, within GFF1840 at 508.727 kb on - strand, within GFF1840 at 508.727 kb on - strand, within GFF1840 at 508.727 kb on - strand, within GFF1840 at 508.727 kb on - strand, within GFF1840 at 508.780 kb on + strand, within GFF1840 at 508.780 kb on + strand, within GFF1840 at 508.780 kb on + strand, within GFF1840 at 508.780 kb on + strand, within GFF1840 at 508.780 kb on + strand, within GFF1840 at 508.781 kb on - strand, within GFF1840 at 508.781 kb on - strand, within GFF1840 at 508.781 kb on - strand, within GFF1840 at 508.781 kb on - strand, within GFF1840 at 508.781 kb on - strand, within GFF1840 at 508.781 kb on - strand, within GFF1840 at 508.781 kb on - strand, within GFF1840 at 509.020 kb on + strand, within GFF1840 at 509.020 kb on + strand, within GFF1840 at 509.020 kb on + strand, within GFF1840 at 509.021 kb on - strand, within GFF1840 at 509.021 kb on - strand, within GFF1840 at 509.021 kb on - strand, within GFF1840 at 509.021 kb on - strand, within GFF1840 at 509.021 kb on - strand, within GFF1840 at 509.029 kb on + strand, within GFF1840 at 509.029 kb on + strand, within GFF1840 at 509.030 kb on - strand, within GFF1840 at 509.030 kb on - strand, within GFF1840 at 509.030 kb on - strand, within GFF1840 at 509.030 kb on - strand, within GFF1840 at 509.030 kb on - strand, within GFF1840 at 509.368 kb on + strand, within GFF1840 at 509.594 kb on + strand at 509.594 kb on + strand at 509.594 kb on + strand at 509.594 kb on + strand at 509.594 kb on + strand at 509.595 kb on - strand at 509.720 kb on + strand at 509.720 kb on + strand at 509.720 kb on + strand at 509.720 kb on + strand at 509.720 kb on + strand at 509.720 kb on + strand at 509.720 kb on + strand at 509.721 kb on - strand at 509.721 kb on - strand at 509.721 kb on - strand at 509.721 kb on - strand at 509.721 kb on - strand at 509.721 kb on - strand at 509.721 kb on - strand at 509.721 kb on - strand at 509.945 kb on + strand, within GFF1841 at 510.086 kb on + strand, within GFF1841 at 510.086 kb on + strand, within GFF1841 at 510.225 kb on - strand, within GFF1841 at 510.225 kb on - strand, within GFF1841 at 510.245 kb on + strand, within GFF1841 at 510.245 kb on + strand, within GFF1841 at 510.245 kb on + strand, within GFF1841 at 510.245 kb on + strand, within GFF1841 at 510.246 kb on - strand, within GFF1841 at 510.524 kb on + strand, within GFF1841 at 510.525 kb on - strand, within GFF1841 at 510.530 kb on + strand, within GFF1841 at 510.530 kb on + strand, within GFF1841 at 510.531 kb on - strand, within GFF1841
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 506,921 + -0.5 506,922 - +0.6 506,922 - -3.0 506,922 - -1.8 506,922 - -1.7 507,001 + -1.2 507,130 + GFF1839 0.25 +0.4 507,130 + GFF1839 0.25 +0.6 507,130 + GFF1839 0.25 +0.0 507,130 + GFF1839 0.25 -0.3 507,131 - GFF1839 0.25 +1.3 507,131 - GFF1839 0.25 -1.8 507,131 - GFF1839 0.25 -0.0 507,131 - GFF1839 0.25 -2.3 507,131 - GFF1839 0.25 -0.9 507,427 + GFF1839 0.63 -0.3 507,427 + GFF1839 0.63 -1.4 507,427 + GFF1839 0.63 +0.2 507,427 + GFF1839 0.63 -0.4 507,428 - GFF1839 0.63 -0.7 507,428 - GFF1839 0.63 +0.7 507,539 - GFF1839 0.77 -2.2 507,578 - GFF1839 0.82 +0.5 507,578 - GFF1839 0.82 -1.3 507,578 - GFF1839 0.82 +0.9 507,773 + -0.3 507,774 - -3.0 507,774 - -0.7 507,774 - -3.4 507,782 + +0.3 507,796 + -0.7 507,796 + -0.2 507,796 + +1.0 507,796 + -1.1 507,796 + -1.7 507,796 + +1.5 507,796 + -0.8 507,796 + -0.2 507,796 + +0.5 507,797 - -1.7 507,797 - -4.2 507,797 - -1.5 507,797 - -0.6 507,797 - -2.1 507,797 - -0.7 507,817 + -0.7 508,357 + GFF1840 0.28 -2.1 508,357 + GFF1840 0.28 +1.3 508,358 - GFF1840 0.28 -0.1 508,358 - GFF1840 0.28 +1.0 508,561 + GFF1840 0.41 -1.5 508,561 + GFF1840 0.41 -2.1 508,561 + GFF1840 0.41 -0.8 508,562 - GFF1840 0.41 -0.3 508,562 - GFF1840 0.41 +0.3 508,595 + GFF1840 0.43 -1.1 508,726 + GFF1840 0.51 +0.9 508,726 + GFF1840 0.51 -0.7 508,726 + GFF1840 0.51 +0.9 508,726 + GFF1840 0.51 -2.4 508,726 + GFF1840 0.51 -1.7 508,726 + GFF1840 0.51 +0.9 508,727 - GFF1840 0.51 -3.0 508,727 - GFF1840 0.51 +0.6 508,727 - GFF1840 0.51 +0.7 508,727 - GFF1840 0.51 -3.6 508,727 - GFF1840 0.51 -2.8 508,727 - GFF1840 0.51 +0.3 508,727 - GFF1840 0.51 -1.1 508,780 + GFF1840 0.54 +1.1 508,780 + GFF1840 0.54 -0.2 508,780 + GFF1840 0.54 +1.3 508,780 + GFF1840 0.54 +0.2 508,780 + GFF1840 0.54 +1.8 508,781 - GFF1840 0.54 -1.7 508,781 - GFF1840 0.54 -0.2 508,781 - GFF1840 0.54 +0.3 508,781 - GFF1840 0.54 +2.8 508,781 - GFF1840 0.54 -2.1 508,781 - GFF1840 0.54 +1.4 508,781 - GFF1840 0.54 -0.5 509,020 + GFF1840 0.69 +3.3 509,020 + GFF1840 0.69 -0.6 509,020 + GFF1840 0.69 -2.1 509,021 - GFF1840 0.69 -2.1 509,021 - GFF1840 0.69 -1.6 509,021 - GFF1840 0.69 +0.3 509,021 - GFF1840 0.69 -1.3 509,021 - GFF1840 0.69 -0.9 509,029 + GFF1840 0.69 -1.0 509,029 + GFF1840 0.69 +1.3 509,030 - GFF1840 0.69 +0.4 509,030 - GFF1840 0.69 -0.7 509,030 - GFF1840 0.69 -1.7 509,030 - GFF1840 0.69 -1.6 509,030 - GFF1840 0.69 +0.2 509,368 + GFF1840 0.90 -0.3 509,594 + -0.7 509,594 + -3.0 509,594 + -3.5 509,594 + -2.3 509,594 + -1.0 509,595 - -1.2 509,720 + -1.3 509,720 + -1.1 509,720 + -2.3 509,720 + +1.1 509,720 + -1.7 509,720 + -2.6 509,720 + +2.3 509,721 - -1.9 509,721 - -1.7 509,721 - +0.9 509,721 - -1.2 509,721 - +0.3 509,721 - -2.0 509,721 - +4.3 509,721 - -1.4 509,945 + GFF1841 0.16 +1.2 510,086 + GFF1841 0.22 -0.6 510,086 + GFF1841 0.22 +0.5 510,225 - GFF1841 0.28 -0.6 510,225 - GFF1841 0.28 -1.4 510,245 + GFF1841 0.29 +1.3 510,245 + GFF1841 0.29 -0.6 510,245 + GFF1841 0.29 +3.8 510,245 + GFF1841 0.29 +0.9 510,246 - GFF1841 0.29 -1.2 510,524 + GFF1841 0.40 -1.9 510,525 - GFF1841 0.40 -2.6 510,530 + GFF1841 0.40 +0.3 510,530 + GFF1841 0.40 +0.2 510,531 - GFF1841 0.40 +0.3
Or see this region's nucleotide sequence