Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1830 and GFF1831 overlap by 4 nucleotides GFF1831 and GFF1832 are separated by 80 nucleotides
GFF1830 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 495,556 to 496,857
GFF1830
GFF1831 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3, at 496,854 to 497,354
GFF1831
GFF1832 - TRAP transporter solute receptor, unknown substrate 3, at 497,435 to 498,490
GFF1832
Position (kb) 496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 495.869 kb on + strand, within GFF1830 at 496.286 kb on + strand, within GFF1830 at 496.745 kb on + strand at 496.751 kb on + strand at 496.806 kb on + strand at 496.810 kb on + strand at 496.811 kb on - strand at 496.811 kb on - strand at 496.811 kb on - strand at 496.975 kb on + strand, within GFF1831 at 496.975 kb on + strand, within GFF1831 at 496.976 kb on - strand, within GFF1831 at 496.976 kb on - strand, within GFF1831 at 497.005 kb on + strand, within GFF1831 at 497.173 kb on + strand, within GFF1831 at 497.357 kb on - strand at 497.451 kb on + strand at 497.589 kb on + strand, within GFF1832 at 497.590 kb on - strand, within GFF1832 at 497.730 kb on + strand, within GFF1832 at 497.731 kb on - strand, within GFF1832 at 497.731 kb on - strand, within GFF1832 at 497.731 kb on - strand, within GFF1832 at 497.769 kb on + strand, within GFF1832 at 497.769 kb on + strand, within GFF1832 at 497.770 kb on - strand, within GFF1832 at 497.770 kb on - strand, within GFF1832 at 497.791 kb on - strand, within GFF1832 at 497.900 kb on + strand, within GFF1832 at 497.900 kb on + strand, within GFF1832 at 497.900 kb on + strand, within GFF1832 at 497.901 kb on - strand, within GFF1832 at 497.901 kb on - strand, within GFF1832 at 498.072 kb on + strand, within GFF1832 at 498.189 kb on + strand, within GFF1832 at 498.189 kb on + strand, within GFF1832 at 498.266 kb on + strand, within GFF1832
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 495,869 + GFF1830 0.24 +0.3 496,286 + GFF1830 0.56 +0.7 496,745 + +0.6 496,751 + +0.5 496,806 + +1.0 496,810 + +1.2 496,811 - -2.4 496,811 - -0.3 496,811 - +0.3 496,975 + GFF1831 0.24 -2.0 496,975 + GFF1831 0.24 -1.4 496,976 - GFF1831 0.24 -1.8 496,976 - GFF1831 0.24 +2.3 497,005 + GFF1831 0.30 +1.3 497,173 + GFF1831 0.64 -0.1 497,357 - +0.8 497,451 + -1.3 497,589 + GFF1832 0.15 -1.4 497,590 - GFF1832 0.15 -1.7 497,730 + GFF1832 0.28 -1.2 497,731 - GFF1832 0.28 +3.0 497,731 - GFF1832 0.28 -0.3 497,731 - GFF1832 0.28 -0.4 497,769 + GFF1832 0.32 -1.4 497,769 + GFF1832 0.32 -1.1 497,770 - GFF1832 0.32 +0.3 497,770 - GFF1832 0.32 +0.4 497,791 - GFF1832 0.34 -0.3 497,900 + GFF1832 0.44 -1.2 497,900 + GFF1832 0.44 +1.9 497,900 + GFF1832 0.44 +0.3 497,901 - GFF1832 0.44 -1.4 497,901 - GFF1832 0.44 +0.8 498,072 + GFF1832 0.60 -1.3 498,189 + GFF1832 0.71 -2.0 498,189 + GFF1832 0.71 -3.3 498,266 + GFF1832 0.79 +1.4
Or see this region's nucleotide sequence