Strain Fitness in Variovorax sp. SCN45 around GFF1792

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1791 and GFF1792 are separated by 142 nucleotidesGFF1792 and GFF1793 are separated by 48 nucleotides GFF1791 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 451,143 to 452,177 GFF1791 GFF1792 - Transcriptional regulator, IclR family, at 452,320 to 453,195 GFF1792 GFF1793 - hypothetical protein, at 453,244 to 454,881 GFF1793 Position (kb) 452 453 454Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 451.523 kb on - strand, within GFF1791at 451.537 kb on + strand, within GFF1791at 451.841 kb on - strand, within GFF1791at 451.841 kb on - strand, within GFF1791at 452.018 kb on - strand, within GFF1791at 452.116 kb on - strandat 452.116 kb on - strandat 452.351 kb on + strandat 452.352 kb on - strandat 452.352 kb on - strandat 452.465 kb on + strand, within GFF1792at 452.465 kb on + strand, within GFF1792at 452.466 kb on - strand, within GFF1792at 452.466 kb on - strand, within GFF1792at 452.525 kb on + strand, within GFF1792at 452.525 kb on + strand, within GFF1792at 452.526 kb on - strand, within GFF1792at 452.526 kb on - strand, within GFF1792at 452.526 kb on - strand, within GFF1792at 452.729 kb on + strand, within GFF1792at 452.729 kb on + strand, within GFF1792at 452.729 kb on + strand, within GFF1792at 452.729 kb on + strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.730 kb on - strand, within GFF1792at 452.801 kb on + strand, within GFF1792at 452.801 kb on + strand, within GFF1792at 452.801 kb on + strand, within GFF1792at 452.802 kb on - strand, within GFF1792at 452.802 kb on - strand, within GFF1792at 452.885 kb on + strand, within GFF1792at 452.885 kb on + strand, within GFF1792at 452.886 kb on - strand, within GFF1792at 452.886 kb on - strand, within GFF1792at 452.918 kb on + strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.094 kb on - strand, within GFF1792at 453.123 kb on + strandat 453.123 kb on + strandat 453.123 kb on + strandat 453.123 kb on + strandat 453.123 kb on + strandat 453.123 kb on + strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.124 kb on - strandat 453.190 kb on + strandat 453.191 kb on - strandat 453.191 kb on - strandat 453.191 kb on - strandat 453.670 kb on + strand, within GFF1793at 453.670 kb on + strand, within GFF1793at 453.671 kb on - strand, within GFF1793at 453.671 kb on - strand, within GFF1793at 453.671 kb on - strand, within GFF1793at 453.911 kb on - strand, within GFF1793at 453.949 kb on + strand, within GFF1793at 453.949 kb on + strand, within GFF1793at 453.949 kb on + strand, within GFF1793at 453.950 kb on - strand, within GFF1793at 453.950 kb on - strand, within GFF1793at 453.950 kb on - strand, within GFF1793at 454.111 kb on + strand, within GFF1793at 454.153 kb on + strand, within GFF1793at 454.153 kb on + strand, within GFF1793at 454.153 kb on + strand, within GFF1793at 454.195 kb on + strand, within GFF1793at 454.195 kb on + strand, within GFF1793at 454.195 kb on + strand, within GFF1793at 454.195 kb on + strand, within GFF1793

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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451,523 - GFF1791 0.37 -0.5
451,537 + GFF1791 0.38 -3.2
451,841 - GFF1791 0.67 -3.0
451,841 - GFF1791 0.67 -2.1
452,018 - GFF1791 0.85 -0.3
452,116 - -1.2
452,116 - +0.7
452,351 + +0.8
452,352 - -0.6
452,352 - -0.2
452,465 + GFF1792 0.17 -0.6
452,465 + GFF1792 0.17 -2.2
452,466 - GFF1792 0.17 -0.1
452,466 - GFF1792 0.17 -0.1
452,525 + GFF1792 0.23 -0.9
452,525 + GFF1792 0.23 +0.2
452,526 - GFF1792 0.24 -0.5
452,526 - GFF1792 0.24 +0.3
452,526 - GFF1792 0.24 -0.8
452,729 + GFF1792 0.47 +0.8
452,729 + GFF1792 0.47 -0.4
452,729 + GFF1792 0.47 +0.7
452,729 + GFF1792 0.47 -1.5
452,730 - GFF1792 0.47 +1.3
452,730 - GFF1792 0.47 -2.5
452,730 - GFF1792 0.47 -0.9
452,730 - GFF1792 0.47 -0.1
452,730 - GFF1792 0.47 +0.0
452,801 + GFF1792 0.55 -2.9
452,801 + GFF1792 0.55 -0.3
452,801 + GFF1792 0.55 -0.7
452,802 - GFF1792 0.55 -0.9
452,802 - GFF1792 0.55 -0.7
452,885 + GFF1792 0.64 -1.2
452,885 + GFF1792 0.64 +0.6
452,886 - GFF1792 0.65 -2.7
452,886 - GFF1792 0.65 -0.2
452,918 + GFF1792 0.68 -1.7
453,094 - GFF1792 0.88 +1.4
453,094 - GFF1792 0.88 +0.7
453,094 - GFF1792 0.88 -2.3
453,094 - GFF1792 0.88 -3.4
453,094 - GFF1792 0.88 -3.0
453,094 - GFF1792 0.88 -1.5
453,094 - GFF1792 0.88 +0.4
453,123 + -1.4
453,123 + -0.1
453,123 + +0.1
453,123 + +0.3
453,123 + +0.7
453,123 + -2.6
453,124 - -0.0
453,124 - +1.0
453,124 - +1.7
453,124 - -2.7
453,124 - -0.1
453,124 - +0.4
453,124 - -0.1
453,124 - -0.5
453,190 + -0.1
453,191 - -1.1
453,191 - -2.6
453,191 - -1.3
453,670 + GFF1793 0.26 +0.8
453,670 + GFF1793 0.26 +0.5
453,671 - GFF1793 0.26 -0.3
453,671 - GFF1793 0.26 -1.8
453,671 - GFF1793 0.26 -0.7
453,911 - GFF1793 0.41 +0.9
453,949 + GFF1793 0.43 +0.9
453,949 + GFF1793 0.43 +0.2
453,949 + GFF1793 0.43 +0.2
453,950 - GFF1793 0.43 -0.3
453,950 - GFF1793 0.43 +1.5
453,950 - GFF1793 0.43 -0.1
454,111 + GFF1793 0.53 -0.9
454,153 + GFF1793 0.55 -2.0
454,153 + GFF1793 0.55 -2.2
454,153 + GFF1793 0.55 -2.8
454,195 + GFF1793 0.58 -1.1
454,195 + GFF1793 0.58 -0.7
454,195 + GFF1793 0.58 +1.6
454,195 + GFF1793 0.58 +2.3

Or see this region's nucleotide sequence