Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1774 and GFF1775 overlap by 4 nucleotides GFF1775 and GFF1776 are separated by 28 nucleotides GFF1776 and GFF1777 are separated by 24 nucleotides GFF1777 and GFF1778 are separated by 26 nucleotides GFF1778 and GFF1779 are separated by 138 nucleotides
GFF1774 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 436,760 to 437,227
GFF1774
GFF1775 - no description, at 437,224 to 437,718
GFF1775
GFF1776 - OsmC-like protein Pfl_1628, at 437,747 to 438,148
GFF1776
GFF1777 - Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily, at 438,173 to 439,354
GFF1777
GFF1778 - Transcriptional regulator, HxlR family, at 439,381 to 439,734
GFF1778
GFF1779 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 439,873 to 440,745
GFF1779
Position (kb) 438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.390 kb on - strand, within GFF1775 at 437.621 kb on - strand, within GFF1775 at 437.621 kb on - strand, within GFF1775 at 437.695 kb on + strand at 437.695 kb on + strand at 437.696 kb on - strand at 437.696 kb on - strand at 437.879 kb on + strand, within GFF1776 at 437.880 kb on - strand, within GFF1776 at 437.924 kb on + strand, within GFF1776 at 437.924 kb on + strand, within GFF1776 at 437.925 kb on - strand, within GFF1776 at 437.925 kb on - strand, within GFF1776 at 438.267 kb on + strand at 438.268 kb on - strand at 438.268 kb on - strand at 438.268 kb on - strand at 438.268 kb on - strand at 438.288 kb on + strand at 438.288 kb on + strand at 438.289 kb on - strand at 438.363 kb on + strand, within GFF1777 at 438.363 kb on + strand, within GFF1777 at 438.363 kb on + strand, within GFF1777 at 438.364 kb on - strand, within GFF1777 at 438.364 kb on - strand, within GFF1777 at 438.364 kb on - strand, within GFF1777 at 438.371 kb on + strand, within GFF1777 at 438.371 kb on + strand, within GFF1777 at 438.371 kb on + strand, within GFF1777 at 438.371 kb on + strand, within GFF1777 at 438.371 kb on + strand, within GFF1777 at 438.371 kb on + strand, within GFF1777 at 438.372 kb on - strand, within GFF1777 at 438.372 kb on - strand, within GFF1777 at 438.372 kb on - strand, within GFF1777 at 438.385 kb on - strand, within GFF1777 at 438.385 kb on - strand, within GFF1777 at 438.405 kb on + strand, within GFF1777 at 438.537 kb on + strand, within GFF1777 at 438.549 kb on + strand, within GFF1777 at 438.549 kb on + strand, within GFF1777 at 438.550 kb on - strand, within GFF1777 at 438.739 kb on + strand, within GFF1777 at 438.740 kb on - strand, within GFF1777 at 438.740 kb on - strand, within GFF1777 at 438.741 kb on + strand, within GFF1777 at 438.741 kb on + strand, within GFF1777 at 438.741 kb on + strand, within GFF1777 at 438.742 kb on - strand, within GFF1777 at 438.742 kb on - strand, within GFF1777 at 438.742 kb on - strand, within GFF1777 at 438.742 kb on - strand, within GFF1777 at 438.816 kb on + strand, within GFF1777 at 438.817 kb on - strand, within GFF1777 at 439.084 kb on + strand, within GFF1777 at 439.257 kb on + strand at 439.257 kb on + strand at 439.257 kb on + strand at 439.257 kb on + strand at 439.258 kb on - strand at 439.383 kb on - strand at 439.499 kb on + strand, within GFF1778 at 439.499 kb on + strand, within GFF1778 at 439.499 kb on + strand, within GFF1778 at 439.500 kb on - strand, within GFF1778 at 439.500 kb on - strand, within GFF1778 at 439.715 kb on + strand at 439.716 kb on - strand at 439.716 kb on - strand at 439.759 kb on + strand at 439.763 kb on + strand at 439.770 kb on + strand at 439.770 kb on + strand at 439.770 kb on + strand at 439.770 kb on + strand at 439.774 kb on + strand at 439.775 kb on - strand at 439.788 kb on + strand at 439.789 kb on - strand at 439.798 kb on + strand at 439.803 kb on + strand at 439.804 kb on - strand at 439.804 kb on - strand at 439.807 kb on + strand at 439.807 kb on + strand at 439.936 kb on + strand at 439.936 kb on + strand at 439.936 kb on + strand at 440.074 kb on + strand, within GFF1779 at 440.075 kb on - strand, within GFF1779 at 440.080 kb on + strand, within GFF1779 at 440.219 kb on - strand, within GFF1779
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 437,174 + GFF1774 0.88 -1.1 437,174 + GFF1774 0.88 -1.6 437,174 + GFF1774 0.88 -3.7 437,174 + GFF1774 0.88 -0.4 437,174 + GFF1774 0.88 -0.1 437,174 + GFF1774 0.88 +0.3 437,174 + GFF1774 0.88 -2.7 437,174 + GFF1774 0.88 -1.4 437,175 - GFF1774 0.89 -1.2 437,175 - GFF1774 0.89 -1.3 437,175 - GFF1774 0.89 +1.3 437,175 - GFF1774 0.89 -1.6 437,175 - GFF1774 0.89 -3.4 437,175 - GFF1774 0.89 -4.6 437,175 - GFF1774 0.89 -1.1 437,390 - GFF1775 0.34 -2.6 437,621 - GFF1775 0.80 -2.9 437,621 - GFF1775 0.80 -0.9 437,695 + +1.3 437,695 + +0.0 437,696 - -3.0 437,696 - +2.1 437,879 + GFF1776 0.33 +1.8 437,880 - GFF1776 0.33 +1.1 437,924 + GFF1776 0.44 +2.3 437,924 + GFF1776 0.44 -0.6 437,925 - GFF1776 0.44 +0.5 437,925 - GFF1776 0.44 +0.1 438,267 + -0.1 438,268 - -0.7 438,268 - +1.1 438,268 - +1.5 438,268 - +0.2 438,288 + -1.6 438,288 + +2.3 438,289 - -2.7 438,363 + GFF1777 0.16 -0.2 438,363 + GFF1777 0.16 +1.9 438,363 + GFF1777 0.16 -1.2 438,364 - GFF1777 0.16 -3.2 438,364 - GFF1777 0.16 +1.6 438,364 - GFF1777 0.16 -0.1 438,371 + GFF1777 0.17 -0.3 438,371 + GFF1777 0.17 +2.7 438,371 + GFF1777 0.17 -0.9 438,371 + GFF1777 0.17 -0.3 438,371 + GFF1777 0.17 -0.3 438,371 + GFF1777 0.17 -0.7 438,372 - GFF1777 0.17 -2.7 438,372 - GFF1777 0.17 -1.3 438,372 - GFF1777 0.17 -2.3 438,385 - GFF1777 0.18 +1.3 438,385 - GFF1777 0.18 -0.8 438,405 + GFF1777 0.20 -0.6 438,537 + GFF1777 0.31 -1.1 438,549 + GFF1777 0.32 -1.3 438,549 + GFF1777 0.32 -2.2 438,550 - GFF1777 0.32 -1.7 438,739 + GFF1777 0.48 +0.9 438,740 - GFF1777 0.48 -2.5 438,740 - GFF1777 0.48 -2.9 438,741 + GFF1777 0.48 -1.4 438,741 + GFF1777 0.48 -1.4 438,741 + GFF1777 0.48 -0.9 438,742 - GFF1777 0.48 -0.6 438,742 - GFF1777 0.48 -0.6 438,742 - GFF1777 0.48 -1.0 438,742 - GFF1777 0.48 -1.2 438,816 + GFF1777 0.54 -0.6 438,817 - GFF1777 0.54 -1.4 439,084 + GFF1777 0.77 -2.4 439,257 + +0.4 439,257 + +1.7 439,257 + +0.8 439,257 + -0.4 439,258 - -0.6 439,383 - -0.7 439,499 + GFF1778 0.33 -0.4 439,499 + GFF1778 0.33 +1.3 439,499 + GFF1778 0.33 -0.9 439,500 - GFF1778 0.34 -0.7 439,500 - GFF1778 0.34 -0.7 439,715 + -1.8 439,716 - +0.3 439,716 - +2.3 439,759 + -2.3 439,763 + +0.2 439,770 + +1.4 439,770 + -0.5 439,770 + -0.7 439,770 + -2.0 439,774 + -1.2 439,775 - -1.5 439,788 + -3.4 439,789 - -1.5 439,798 + -1.3 439,803 + -2.6 439,804 - -1.4 439,804 - -2.4 439,807 + -3.0 439,807 + -1.9 439,936 + -1.8 439,936 + +0.8 439,936 + -0.5 440,074 + GFF1779 0.23 -0.7 440,075 - GFF1779 0.23 +0.5 440,080 + GFF1779 0.24 +1.6 440,219 - GFF1779 0.40 -1.4
Or see this region's nucleotide sequence