Strain Fitness in Variovorax sp. SCN45 around GFF1683
Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Community=Locust bean gum; Passage=4 |
---|---|---|---|---|---|
remove | |||||
327,489 | + | GFF1682 | 0.42 | -1.2 | |
327,872 | + | GFF1682 | 0.69 | -1.2 | |
327,872 | + | GFF1682 | 0.69 | +0.5 | |
327,873 | - | GFF1682 | 0.69 | -0.6 | |
328,423 | + | GFF1683 | 0.20 | +0.5 | |
329,359 | - | GFF1684 | 0.68 | -1.1 | |
329,359 | - | GFF1684 | 0.68 | +1.8 | |
329,400 | + | GFF1684 | 0.74 | -0.5 | |
329,415 | + | GFF1684 | 0.77 | -0.0 | |
329,415 | + | GFF1684 | 0.77 | -0.8 | |
329,919 | + | GFF1685 | 0.30 | +1.2 | |
329,919 | + | GFF1685 | 0.30 | -0.8 | |
329,920 | - | GFF1685 | 0.30 | -1.5 |
Or see this region's nucleotide sequence