Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1663 and GFF1664 overlap by 4 nucleotides
GFF1663 - Isocitrate lyase (EC 4.1.3.1), at 307,106 to 307,972
GFF1663
GFF1664 - redox proteins related to the succinate dehydrogenases and fumarate reductases, at 307,969 to 309,384
GFF1664
Position (kb) 307
308 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.111 kb on + strand at 306.112 kb on - strand at 306.112 kb on - strand at 306.112 kb on - strand at 306.112 kb on - strand at 306.112 kb on - strand at 306.274 kb on + strand at 306.274 kb on + strand at 306.275 kb on - strand at 306.275 kb on - strand at 306.488 kb on - strand at 306.539 kb on + strand at 306.694 kb on + strand at 306.694 kb on + strand at 306.694 kb on + strand at 306.844 kb on + strand at 307.116 kb on + strand at 307.117 kb on - strand at 307.230 kb on + strand, within GFF1663 at 307.231 kb on + strand, within GFF1663 at 307.231 kb on - strand, within GFF1663 at 307.231 kb on - strand, within GFF1663 at 307.233 kb on + strand, within GFF1663 at 307.233 kb on + strand, within GFF1663 at 307.458 kb on + strand, within GFF1663 at 307.833 kb on + strand, within GFF1663 at 307.857 kb on + strand, within GFF1663 at 307.858 kb on - strand, within GFF1663 at 307.908 kb on + strand at 307.908 kb on + strand at 307.908 kb on + strand at 307.909 kb on - strand at 307.909 kb on - strand at 307.909 kb on - strand at 307.957 kb on - strand at 308.066 kb on + strand at 308.067 kb on - strand at 308.225 kb on + strand, within GFF1664 at 308.437 kb on + strand, within GFF1664 at 308.437 kb on + strand, within GFF1664 at 308.437 kb on + strand, within GFF1664 at 308.438 kb on - strand, within GFF1664 at 308.438 kb on - strand, within GFF1664 at 308.438 kb on - strand, within GFF1664 at 308.438 kb on - strand, within GFF1664
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 306,111 + -0.5 306,111 + -0.6 306,111 + +2.2 306,111 + +0.4 306,111 + -2.3 306,111 + -1.5 306,111 + +1.2 306,111 + -0.8 306,112 - -1.2 306,112 - +1.0 306,112 - +0.7 306,112 - +0.7 306,112 - +0.4 306,274 + -4.0 306,274 + +1.9 306,275 - +1.3 306,275 - -1.1 306,488 - -0.8 306,539 + -0.3 306,694 + -1.5 306,694 + -2.2 306,694 + -0.3 306,844 + +0.4 307,116 + -1.3 307,117 - -2.3 307,230 + GFF1663 0.14 +1.2 307,231 + GFF1663 0.14 +0.2 307,231 - GFF1663 0.14 +1.2 307,231 - GFF1663 0.14 -2.5 307,233 + GFF1663 0.15 -0.5 307,233 + GFF1663 0.15 -1.9 307,458 + GFF1663 0.41 +2.7 307,833 + GFF1663 0.84 -2.2 307,857 + GFF1663 0.87 +0.7 307,858 - GFF1663 0.87 -1.4 307,908 + +1.8 307,908 + +2.1 307,908 + -0.9 307,909 - -0.8 307,909 - +0.2 307,909 - -0.3 307,957 - +0.2 308,066 + -1.9 308,067 - -1.6 308,225 + GFF1664 0.18 -0.4 308,437 + GFF1664 0.33 +1.1 308,437 + GFF1664 0.33 -0.4 308,437 + GFF1664 0.33 -1.8 308,438 - GFF1664 0.33 +0.7 308,438 - GFF1664 0.33 -0.5 308,438 - GFF1664 0.33 -0.1 308,438 - GFF1664 0.33 +1.9
Or see this region's nucleotide sequence