Strain Fitness in Variovorax sp. SCN45 around GFF1653

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1652 and GFF1653 are separated by 264 nucleotidesGFF1653 and GFF1654 are separated by 24 nucleotides GFF1652 - Uncharacterized MFS-type transporter, at 291,495 to 292,736 GFF1652 GFF1653 - Transcriptional regulator, AcrR family, at 293,001 to 293,738 GFF1653 GFF1654 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 293,763 to 295,457 GFF1654 Position (kb) 293 294Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 292.167 kb on + strand, within GFF1652at 292.168 kb on - strand, within GFF1652at 292.168 kb on - strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.207 kb on + strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.208 kb on - strand, within GFF1652at 292.316 kb on - strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.342 kb on + strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.343 kb on - strand, within GFF1652at 292.363 kb on + strand, within GFF1652at 292.364 kb on - strand, within GFF1652at 292.364 kb on - strand, within GFF1652at 292.676 kb on + strandat 292.676 kb on + strandat 292.859 kb on + strandat 292.860 kb on - strandat 292.960 kb on + strandat 293.286 kb on + strand, within GFF1653at 293.287 kb on - strand, within GFF1653at 293.334 kb on + strand, within GFF1653at 293.335 kb on - strand, within GFF1653at 293.335 kb on - strand, within GFF1653at 293.335 kb on - strand, within GFF1653at 293.448 kb on + strand, within GFF1653at 293.448 kb on + strand, within GFF1653at 293.448 kb on + strand, within GFF1653at 293.449 kb on - strand, within GFF1653at 293.449 kb on - strand, within GFF1653at 293.449 kb on - strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.454 kb on + strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.455 kb on - strand, within GFF1653at 293.547 kb on + strand, within GFF1653at 293.548 kb on - strand, within GFF1653at 293.548 kb on - strand, within GFF1653at 293.771 kb on + strandat 293.771 kb on + strandat 293.863 kb on - strandat 294.186 kb on + strand, within GFF1654at 294.187 kb on - strand, within GFF1654

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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292,167 + GFF1652 0.54 +1.2
292,168 - GFF1652 0.54 -0.6
292,168 - GFF1652 0.54 +0.5
292,207 + GFF1652 0.57 -0.4
292,207 + GFF1652 0.57 -2.5
292,207 + GFF1652 0.57 +1.1
292,207 + GFF1652 0.57 -1.0
292,207 + GFF1652 0.57 -0.0
292,207 + GFF1652 0.57 -2.3
292,208 - GFF1652 0.57 -2.1
292,208 - GFF1652 0.57 -2.6
292,208 - GFF1652 0.57 -0.9
292,208 - GFF1652 0.57 +0.8
292,208 - GFF1652 0.57 +0.7
292,208 - GFF1652 0.57 -1.2
292,208 - GFF1652 0.57 +1.2
292,316 - GFF1652 0.66 -1.8
292,342 + GFF1652 0.68 -0.0
292,342 + GFF1652 0.68 -0.9
292,342 + GFF1652 0.68 -0.4
292,342 + GFF1652 0.68 -1.1
292,342 + GFF1652 0.68 -2.6
292,342 + GFF1652 0.68 +2.0
292,342 + GFF1652 0.68 +0.5
292,342 + GFF1652 0.68 -0.3
292,343 - GFF1652 0.68 -2.3
292,343 - GFF1652 0.68 -3.6
292,343 - GFF1652 0.68 -1.3
292,343 - GFF1652 0.68 +0.2
292,343 - GFF1652 0.68 +0.2
292,343 - GFF1652 0.68 -2.6
292,343 - GFF1652 0.68 +0.7
292,343 - GFF1652 0.68 +0.9
292,363 + GFF1652 0.70 -2.0
292,364 - GFF1652 0.70 -0.5
292,364 - GFF1652 0.70 -1.6
292,676 + +0.9
292,676 + +1.2
292,859 + -2.8
292,860 - -0.9
292,960 + -0.1
293,286 + GFF1653 0.39 -1.0
293,287 - GFF1653 0.39 +0.7
293,334 + GFF1653 0.45 -0.8
293,335 - GFF1653 0.45 -1.4
293,335 - GFF1653 0.45 -0.1
293,335 - GFF1653 0.45 +0.7
293,448 + GFF1653 0.61 -2.3
293,448 + GFF1653 0.61 -2.6
293,448 + GFF1653 0.61 +0.2
293,449 - GFF1653 0.61 -2.1
293,449 - GFF1653 0.61 +1.0
293,449 - GFF1653 0.61 +0.7
293,454 + GFF1653 0.61 +0.2
293,454 + GFF1653 0.61 +0.0
293,454 + GFF1653 0.61 -1.3
293,454 + GFF1653 0.61 +0.7
293,454 + GFF1653 0.61 +0.2
293,454 + GFF1653 0.61 -1.8
293,454 + GFF1653 0.61 -2.0
293,455 - GFF1653 0.62 -0.6
293,455 - GFF1653 0.62 +0.5
293,455 - GFF1653 0.62 -1.1
293,455 - GFF1653 0.62 -0.3
293,455 - GFF1653 0.62 -0.3
293,455 - GFF1653 0.62 -0.7
293,455 - GFF1653 0.62 +2.5
293,547 + GFF1653 0.74 -0.0
293,548 - GFF1653 0.74 +0.2
293,548 - GFF1653 0.74 -2.7
293,771 + -1.2
293,771 + -3.3
293,863 - +0.8
294,186 + GFF1654 0.25 +2.0
294,187 - GFF1654 0.25 -1.0

Or see this region's nucleotide sequence