Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1631 and GFF1632 are separated by 136 nucleotides GFF1632 and GFF1633 are separated by 8 nucleotides
GFF1631 - L-lysine 6-monooxygenase (Lysine N(6)-hydroxylase) protein, at 232,610 to 233,926
GFF1631
GFF1632 - RNA polymerase ECF-type sigma factor, at 234,063 to 234,695
GFF1632
GFF1633 - Probable transmembrane sensor, at 234,704 to 235,771
GFF1633
Position (kb) 234
235 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 233.165 kb on + strand, within GFF1631 at 233.166 kb on - strand, within GFF1631 at 233.477 kb on + strand, within GFF1631 at 233.613 kb on - strand, within GFF1631 at 233.639 kb on + strand, within GFF1631 at 233.639 kb on + strand, within GFF1631 at 234.088 kb on + strand at 234.088 kb on + strand at 234.097 kb on - strand at 234.507 kb on + strand, within GFF1632 at 234.508 kb on - strand, within GFF1632 at 234.668 kb on + strand at 235.050 kb on - strand, within GFF1633 at 235.050 kb on - strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.079 kb on + strand, within GFF1633 at 235.452 kb on + strand, within GFF1633 at 235.452 kb on + strand, within GFF1633 at 235.452 kb on + strand, within GFF1633 at 235.453 kb on - strand, within GFF1633 at 235.453 kb on - strand, within GFF1633 at 235.453 kb on - strand, within GFF1633 at 235.583 kb on + strand, within GFF1633 at 235.583 kb on + strand, within GFF1633
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 233,165 + GFF1631 0.42 -1.1 233,166 - GFF1631 0.42 +3.4 233,477 + GFF1631 0.66 +0.3 233,613 - GFF1631 0.76 +1.2 233,639 + GFF1631 0.78 -0.9 233,639 + GFF1631 0.78 -0.8 234,088 + +0.9 234,088 + -0.1 234,097 - -0.9 234,507 + GFF1632 0.70 -0.1 234,508 - GFF1632 0.70 +1.8 234,668 + -1.5 235,050 - GFF1633 0.32 -2.1 235,050 - GFF1633 0.32 -0.6 235,079 + GFF1633 0.35 +0.6 235,079 + GFF1633 0.35 +0.4 235,079 + GFF1633 0.35 +2.2 235,079 + GFF1633 0.35 +0.3 235,452 + GFF1633 0.70 -0.1 235,452 + GFF1633 0.70 -2.2 235,452 + GFF1633 0.70 -0.5 235,453 - GFF1633 0.70 +1.2 235,453 - GFF1633 0.70 +0.3 235,453 - GFF1633 0.70 -0.1 235,583 + GFF1633 0.82 +1.4 235,583 + GFF1633 0.82 +0.7
Or see this region's nucleotide sequence