Strain Fitness in Variovorax sp. SCN45 around GFF1597

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1595 and GFF1596 are separated by 75 nucleotidesGFF1596 and GFF1597 are separated by 24 nucleotidesGFF1597 and GFF1598 are separated by 171 nucleotidesGFF1598 and GFF1599 overlap by 4 nucleotides GFF1595 - Transcriptional regulator, AraC family, at 192,877 to 193,851 GFF1595 GFF1596 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 193,927 to 194,745 GFF1596 GFF1597 - Acetolactate synthase large subunit (EC 2.2.1.6), at 194,770 to 196,578 GFF1597 GFF1598 - no description, at 196,750 to 197,148 GFF1598 GFF1599 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 197,145 to 198,116 GFF1599 Position (kb) 194 195 196 197Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 193.837 kb on + strandat 193.895 kb on + strandat 193.896 kb on - strandat 193.896 kb on - strandat 193.896 kb on - strandat 193.896 kb on - strandat 193.937 kb on + strandat 194.117 kb on + strand, within GFF1596at 194.117 kb on + strand, within GFF1596at 194.117 kb on + strand, within GFF1596at 194.118 kb on - strand, within GFF1596at 194.249 kb on + strand, within GFF1596at 194.249 kb on + strand, within GFF1596at 194.250 kb on - strand, within GFF1596at 194.359 kb on + strand, within GFF1596at 194.359 kb on + strand, within GFF1596at 194.359 kb on + strand, within GFF1596at 194.360 kb on - strand, within GFF1596at 194.360 kb on - strand, within GFF1596at 194.360 kb on - strand, within GFF1596at 194.456 kb on - strand, within GFF1596at 194.456 kb on - strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.530 kb on + strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.531 kb on - strand, within GFF1596at 194.744 kb on - strandat 194.996 kb on + strand, within GFF1597at 194.997 kb on - strand, within GFF1597at 194.997 kb on - strand, within GFF1597at 195.057 kb on - strand, within GFF1597at 195.095 kb on + strand, within GFF1597at 195.095 kb on + strand, within GFF1597at 195.096 kb on - strand, within GFF1597at 195.096 kb on - strand, within GFF1597at 195.273 kb on - strand, within GFF1597at 195.317 kb on + strand, within GFF1597at 195.317 kb on + strand, within GFF1597at 195.317 kb on + strand, within GFF1597at 195.317 kb on + strand, within GFF1597at 195.318 kb on - strand, within GFF1597at 195.318 kb on - strand, within GFF1597at 195.398 kb on + strand, within GFF1597at 195.399 kb on - strand, within GFF1597at 195.860 kb on + strand, within GFF1597at 195.860 kb on + strand, within GFF1597at 195.860 kb on + strand, within GFF1597at 195.861 kb on - strand, within GFF1597at 195.861 kb on - strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.866 kb on + strand, within GFF1597at 195.867 kb on - strand, within GFF1597at 195.867 kb on - strand, within GFF1597at 195.867 kb on - strand, within GFF1597at 195.941 kb on + strand, within GFF1597at 195.941 kb on + strand, within GFF1597at 195.941 kb on + strand, within GFF1597at 195.941 kb on + strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 195.942 kb on - strand, within GFF1597at 196.223 kb on + strand, within GFF1597at 196.224 kb on - strand, within GFF1597at 196.391 kb on + strand, within GFF1597at 196.391 kb on + strand, within GFF1597at 196.391 kb on + strand, within GFF1597at 196.392 kb on - strand, within GFF1597at 196.403 kb on - strandat 196.403 kb on - strandat 196.583 kb on + strandat 196.584 kb on - strandat 196.584 kb on - strandat 196.584 kb on - strandat 196.605 kb on + strandat 196.609 kb on + strandat 196.733 kb on + strandat 196.733 kb on + strandat 196.751 kb on + strandat 196.752 kb on - strandat 196.752 kb on - strandat 196.752 kb on - strandat 196.752 kb on - strandat 196.826 kb on - strand, within GFF1598at 197.012 kb on + strand, within GFF1598at 197.012 kb on + strand, within GFF1598at 197.013 kb on - strand, within GFF1598at 197.431 kb on + strand, within GFF1599at 197.461 kb on + strand, within GFF1599at 197.461 kb on + strand, within GFF1599at 197.461 kb on + strand, within GFF1599at 197.462 kb on - strand, within GFF1599at 197.462 kb on - strand, within GFF1599at 197.500 kb on + strand, within GFF1599at 197.518 kb on + strand, within GFF1599at 197.518 kb on + strand, within GFF1599at 197.518 kb on + strand, within GFF1599at 197.518 kb on + strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599at 197.519 kb on - strand, within GFF1599

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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193,837 + -1.1
193,895 + -2.0
193,896 - +0.7
193,896 - +0.1
193,896 - -2.2
193,896 - -2.7
193,937 + +0.3
194,117 + GFF1596 0.23 -0.3
194,117 + GFF1596 0.23 -1.1
194,117 + GFF1596 0.23 -0.6
194,118 - GFF1596 0.23 +3.2
194,249 + GFF1596 0.39 -2.0
194,249 + GFF1596 0.39 +1.0
194,250 - GFF1596 0.39 +0.2
194,359 + GFF1596 0.53 +0.6
194,359 + GFF1596 0.53 -1.2
194,359 + GFF1596 0.53 -1.2
194,360 - GFF1596 0.53 -1.1
194,360 - GFF1596 0.53 -1.0
194,360 - GFF1596 0.53 -1.3
194,456 - GFF1596 0.65 -0.5
194,456 - GFF1596 0.65 -1.2
194,530 + GFF1596 0.74 -0.5
194,530 + GFF1596 0.74 -0.1
194,530 + GFF1596 0.74 -3.3
194,530 + GFF1596 0.74 -0.9
194,531 - GFF1596 0.74 +0.6
194,531 - GFF1596 0.74 +0.9
194,531 - GFF1596 0.74 -0.6
194,531 - GFF1596 0.74 -2.8
194,531 - GFF1596 0.74 -0.8
194,531 - GFF1596 0.74 -2.8
194,531 - GFF1596 0.74 +3.0
194,531 - GFF1596 0.74 -2.3
194,531 - GFF1596 0.74 -1.7
194,744 - -0.4
194,996 + GFF1597 0.12 -0.4
194,997 - GFF1597 0.13 -0.2
194,997 - GFF1597 0.13 -1.5
195,057 - GFF1597 0.16 -2.1
195,095 + GFF1597 0.18 -1.0
195,095 + GFF1597 0.18 +0.7
195,096 - GFF1597 0.18 -2.1
195,096 - GFF1597 0.18 +0.7
195,273 - GFF1597 0.28 -0.4
195,317 + GFF1597 0.30 -0.4
195,317 + GFF1597 0.30 -1.4
195,317 + GFF1597 0.30 -2.0
195,317 + GFF1597 0.30 -1.7
195,318 - GFF1597 0.30 -1.3
195,318 - GFF1597 0.30 +0.3
195,398 + GFF1597 0.35 -0.7
195,399 - GFF1597 0.35 -1.4
195,860 + GFF1597 0.60 -1.9
195,860 + GFF1597 0.60 -3.3
195,860 + GFF1597 0.60 -0.6
195,861 - GFF1597 0.60 -2.1
195,861 - GFF1597 0.60 -1.0
195,866 + GFF1597 0.61 -2.6
195,866 + GFF1597 0.61 -0.4
195,866 + GFF1597 0.61 -0.9
195,866 + GFF1597 0.61 -0.3
195,866 + GFF1597 0.61 -2.4
195,866 + GFF1597 0.61 -1.5
195,867 - GFF1597 0.61 +0.4
195,867 - GFF1597 0.61 -2.0
195,867 - GFF1597 0.61 +0.7
195,941 + GFF1597 0.65 -1.9
195,941 + GFF1597 0.65 +2.2
195,941 + GFF1597 0.65 +0.4
195,941 + GFF1597 0.65 -0.0
195,942 - GFF1597 0.65 +0.6
195,942 - GFF1597 0.65 +0.4
195,942 - GFF1597 0.65 -1.0
195,942 - GFF1597 0.65 -0.6
195,942 - GFF1597 0.65 -1.0
196,223 + GFF1597 0.80 -1.1
196,224 - GFF1597 0.80 -0.4
196,391 + GFF1597 0.90 -0.5
196,391 + GFF1597 0.90 -0.8
196,391 + GFF1597 0.90 +0.1
196,392 - GFF1597 0.90 -2.9
196,403 - -1.4
196,403 - +0.3
196,583 + -1.3
196,584 - -0.3
196,584 - +0.2
196,584 - -0.9
196,605 + +1.1
196,609 + +1.3
196,733 + +3.4
196,733 + +1.2
196,751 + -0.2
196,752 - +1.3
196,752 - -0.2
196,752 - -0.4
196,752 - +0.6
196,826 - GFF1598 0.19 -0.5
197,012 + GFF1598 0.66 -0.4
197,012 + GFF1598 0.66 +1.0
197,013 - GFF1598 0.66 -0.6
197,431 + GFF1599 0.29 -0.5
197,461 + GFF1599 0.33 -1.9
197,461 + GFF1599 0.33 +0.4
197,461 + GFF1599 0.33 +0.1
197,462 - GFF1599 0.33 +1.2
197,462 - GFF1599 0.33 +0.4
197,500 + GFF1599 0.37 -0.6
197,518 + GFF1599 0.38 -0.2
197,518 + GFF1599 0.38 -2.2
197,518 + GFF1599 0.38 +0.1
197,518 + GFF1599 0.38 -0.6
197,519 - GFF1599 0.38 -1.5
197,519 - GFF1599 0.38 -1.2
197,519 - GFF1599 0.38 -0.1
197,519 - GFF1599 0.38 +0.6
197,519 - GFF1599 0.38 +0.8
197,519 - GFF1599 0.38 -1.4
197,519 - GFF1599 0.38 -2.4

Or see this region's nucleotide sequence