Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1590 and GFF1591 are separated by 0 nucleotides GFF1591 and GFF1592 overlap by 4 nucleotides GFF1592 and GFF1593 are separated by 70 nucleotides GFF1593 and GFF1594 overlap by 4 nucleotides GFF1594 and GFF1595 are separated by 115 nucleotides
GFF1590 - FIG057251: Fe-S oxidoreductase, at 188,722 to 189,111
GFF1590
GFF1591 - FIG066100: Diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 189,112 to 189,852
GFF1591
GFF1592 - Response regulator/GGDEF/EAL domain protein, at 189,849 to 192,089
GFF1592
GFF1593 - no description, at 192,160 to 192,456
GFF1593
GFF1594 - Antitoxin DinJ (binds YafQ toxin), at 192,453 to 192,761
GFF1594
GFF1595 - Transcriptional regulator, AraC family, at 192,877 to 193,851
GFF1595
Position (kb) 189
190
191
192
193 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 188.866 kb on + strand, within GFF1590 at 188.866 kb on + strand, within GFF1590 at 188.866 kb on + strand, within GFF1590 at 188.866 kb on + strand, within GFF1590 at 188.867 kb on - strand, within GFF1590 at 188.917 kb on + strand, within GFF1590 at 189.010 kb on + strand, within GFF1590 at 189.011 kb on - strand, within GFF1590 at 189.248 kb on - strand, within GFF1591 at 189.248 kb on - strand, within GFF1591 at 189.676 kb on + strand, within GFF1591 at 189.676 kb on + strand, within GFF1591 at 189.676 kb on + strand, within GFF1591 at 189.676 kb on + strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.677 kb on - strand, within GFF1591 at 189.763 kb on + strand, within GFF1591 at 189.763 kb on + strand, within GFF1591 at 189.764 kb on - strand, within GFF1591 at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.787 kb on + strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 189.788 kb on - strand at 190.012 kb on - strand at 190.212 kb on + strand, within GFF1592 at 190.213 kb on - strand, within GFF1592 at 190.293 kb on + strand, within GFF1592 at 190.294 kb on - strand, within GFF1592 at 190.294 kb on - strand, within GFF1592 at 190.611 kb on + strand, within GFF1592 at 190.611 kb on + strand, within GFF1592 at 190.789 kb on - strand, within GFF1592 at 190.789 kb on - strand, within GFF1592 at 190.789 kb on - strand, within GFF1592 at 190.797 kb on + strand, within GFF1592 at 190.797 kb on + strand, within GFF1592 at 190.798 kb on - strand, within GFF1592 at 190.798 kb on - strand, within GFF1592 at 190.798 kb on - strand, within GFF1592 at 190.798 kb on - strand, within GFF1592 at 191.142 kb on + strand, within GFF1592 at 191.142 kb on + strand, within GFF1592 at 191.247 kb on + strand, within GFF1592 at 191.247 kb on + strand, within GFF1592 at 191.340 kb on + strand, within GFF1592 at 191.340 kb on + strand, within GFF1592 at 191.340 kb on + strand, within GFF1592 at 191.340 kb on + strand, within GFF1592 at 191.341 kb on - strand, within GFF1592 at 191.767 kb on - strand, within GFF1592 at 191.781 kb on + strand, within GFF1592 at 191.782 kb on - strand, within GFF1592 at 191.782 kb on - strand, within GFF1592 at 191.782 kb on - strand, within GFF1592 at 191.982 kb on + strand at 191.982 kb on + strand at 191.982 kb on + strand at 191.983 kb on - strand at 191.983 kb on - strand at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.257 kb on + strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.258 kb on - strand, within GFF1593 at 192.340 kb on + strand, within GFF1593 at 192.340 kb on + strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.341 kb on - strand, within GFF1593 at 192.409 kb on + strand, within GFF1593 at 192.677 kb on + strand, within GFF1594 at 192.677 kb on + strand, within GFF1594 at 192.677 kb on + strand, within GFF1594 at 192.677 kb on + strand, within GFF1594 at 192.677 kb on + strand, within GFF1594 at 192.678 kb on - strand, within GFF1594 at 192.798 kb on + strand at 192.892 kb on - strand at 192.892 kb on - strand at 192.892 kb on - strand at 192.892 kb on - strand at 193.001 kb on + strand, within GFF1595 at 193.059 kb on + strand, within GFF1595 at 193.060 kb on - strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.088 kb on + strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595 at 193.089 kb on - strand, within GFF1595
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 188,866 + GFF1590 0.37 -0.2 188,866 + GFF1590 0.37 -0.2 188,866 + GFF1590 0.37 +0.9 188,866 + GFF1590 0.37 -1.5 188,867 - GFF1590 0.37 -0.4 188,917 + GFF1590 0.50 -0.7 189,010 + GFF1590 0.74 -1.0 189,011 - GFF1590 0.74 -1.1 189,248 - GFF1591 0.18 -0.5 189,248 - GFF1591 0.18 -2.4 189,676 + GFF1591 0.76 -1.1 189,676 + GFF1591 0.76 +1.2 189,676 + GFF1591 0.76 -0.8 189,676 + GFF1591 0.76 +1.2 189,677 - GFF1591 0.76 -1.8 189,677 - GFF1591 0.76 -2.5 189,677 - GFF1591 0.76 -3.0 189,677 - GFF1591 0.76 -1.7 189,677 - GFF1591 0.76 -0.2 189,763 + GFF1591 0.88 +1.9 189,763 + GFF1591 0.88 +0.7 189,764 - GFF1591 0.88 -1.0 189,787 + +0.5 189,787 + +0.3 189,787 + -0.2 189,787 + +0.2 189,787 + +0.6 189,787 + +1.6 189,787 + -0.7 189,787 + +2.2 189,787 + -1.0 189,788 - +1.5 189,788 - -0.7 189,788 - -0.2 189,788 - -2.2 189,788 - -3.5 189,788 - -0.3 189,788 - +1.3 189,788 - -3.2 189,788 - -1.6 190,012 - -1.4 190,212 + GFF1592 0.16 -2.5 190,213 - GFF1592 0.16 -0.8 190,293 + GFF1592 0.20 -0.7 190,294 - GFF1592 0.20 -2.6 190,294 - GFF1592 0.20 +2.4 190,611 + GFF1592 0.34 -2.0 190,611 + GFF1592 0.34 -0.2 190,789 - GFF1592 0.42 +1.5 190,789 - GFF1592 0.42 -0.1 190,789 - GFF1592 0.42 +1.1 190,797 + GFF1592 0.42 +3.3 190,797 + GFF1592 0.42 +0.3 190,798 - GFF1592 0.42 -1.6 190,798 - GFF1592 0.42 +0.2 190,798 - GFF1592 0.42 +1.3 190,798 - GFF1592 0.42 +0.8 191,142 + GFF1592 0.58 +0.6 191,142 + GFF1592 0.58 -0.6 191,247 + GFF1592 0.62 -1.0 191,247 + GFF1592 0.62 -0.1 191,340 + GFF1592 0.67 +0.8 191,340 + GFF1592 0.67 +0.6 191,340 + GFF1592 0.67 -0.1 191,340 + GFF1592 0.67 +0.4 191,341 - GFF1592 0.67 +0.7 191,767 - GFF1592 0.86 +2.2 191,781 + GFF1592 0.86 +0.2 191,782 - GFF1592 0.86 -2.3 191,782 - GFF1592 0.86 -0.8 191,782 - GFF1592 0.86 +0.3 191,982 + -0.1 191,982 + +3.4 191,982 + +1.3 191,983 - -0.6 191,983 - +2.3 192,257 + GFF1593 0.33 +1.2 192,257 + GFF1593 0.33 -0.5 192,257 + GFF1593 0.33 +0.9 192,257 + GFF1593 0.33 -1.5 192,257 + GFF1593 0.33 -0.4 192,257 + GFF1593 0.33 -2.4 192,257 + GFF1593 0.33 -2.0 192,257 + GFF1593 0.33 +0.5 192,257 + GFF1593 0.33 +0.4 192,258 - GFF1593 0.33 -0.4 192,258 - GFF1593 0.33 +1.5 192,258 - GFF1593 0.33 -1.2 192,258 - GFF1593 0.33 -2.4 192,258 - GFF1593 0.33 -0.8 192,340 + GFF1593 0.61 -1.1 192,340 + GFF1593 0.61 -0.8 192,341 - GFF1593 0.61 +1.7 192,341 - GFF1593 0.61 -3.9 192,341 - GFF1593 0.61 -1.6 192,341 - GFF1593 0.61 +2.9 192,341 - GFF1593 0.61 -0.1 192,341 - GFF1593 0.61 +0.9 192,409 + GFF1593 0.84 +0.5 192,677 + GFF1594 0.72 -0.9 192,677 + GFF1594 0.72 -2.1 192,677 + GFF1594 0.72 -1.5 192,677 + GFF1594 0.72 -0.6 192,677 + GFF1594 0.72 +1.2 192,678 - GFF1594 0.73 -4.6 192,798 + -1.1 192,892 - +0.2 192,892 - -1.9 192,892 - +0.7 192,892 - -0.2 193,001 + GFF1595 0.13 -2.7 193,059 + GFF1595 0.19 -2.5 193,060 - GFF1595 0.19 +1.7 193,088 + GFF1595 0.22 -0.4 193,088 + GFF1595 0.22 -2.7 193,088 + GFF1595 0.22 +0.6 193,088 + GFF1595 0.22 -1.4 193,088 + GFF1595 0.22 +0.4 193,089 - GFF1595 0.22 -1.6 193,089 - GFF1595 0.22 -1.5 193,089 - GFF1595 0.22 -1.2 193,089 - GFF1595 0.22 -2.2 193,089 - GFF1595 0.22 +0.6 193,089 - GFF1595 0.22 -0.4 193,089 - GFF1595 0.22 +0.5 193,089 - GFF1595 0.22 -0.4
Or see this region's nucleotide sequence