Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1557 and GFF1558 are separated by 99 nucleotides GFF1558 and GFF1559 are separated by 9 nucleotides GFF1559 and GFF1560 are separated by 186 nucleotides
GFF1557 - ortholog of Bordetella pertussis (BX470248) BP3300, at 155,537 to 156,514
GFF1557
GFF1558 - Uncharacterized ATP-dependent DNA helicase PA3272, at 156,614 to 160,987
GFF1558
GFF1559 - Mg(2+)-transport-ATPase-associated protein MgtC, at 160,997 to 161,716
GFF1559
GFF1560 - hypothetical protein, at 161,903 to 162,370
GFF1560
Position (kb) 156
157
158
159
160
161 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 156.425 kb on + strand at 156.426 kb on - strand at 156.426 kb on - strand at 156.426 kb on - strand at 156.426 kb on - strand at 156.558 kb on + strand at 156.558 kb on + strand at 156.559 kb on - strand at 156.601 kb on - strand at 156.845 kb on + strand at 156.845 kb on + strand at 156.846 kb on - strand at 156.846 kb on - strand at 156.846 kb on - strand at 157.052 kb on + strand, within GFF1558 at 157.052 kb on + strand, within GFF1558 at 157.052 kb on + strand, within GFF1558 at 157.053 kb on - strand, within GFF1558 at 157.053 kb on - strand, within GFF1558 at 157.053 kb on - strand, within GFF1558 at 157.418 kb on + strand, within GFF1558 at 157.418 kb on + strand, within GFF1558 at 157.418 kb on + strand, within GFF1558 at 157.418 kb on + strand, within GFF1558 at 157.418 kb on + strand, within GFF1558 at 157.418 kb on + strand, within GFF1558 at 157.418 kb on + strand, within GFF1558 at 157.419 kb on - strand, within GFF1558 at 157.419 kb on - strand, within GFF1558 at 157.419 kb on - strand, within GFF1558 at 157.419 kb on - strand, within GFF1558 at 157.419 kb on - strand, within GFF1558 at 157.667 kb on - strand, within GFF1558 at 157.848 kb on + strand, within GFF1558 at 157.848 kb on + strand, within GFF1558 at 157.848 kb on + strand, within GFF1558 at 157.849 kb on - strand, within GFF1558 at 157.956 kb on - strand, within GFF1558 at 157.980 kb on - strand, within GFF1558 at 157.980 kb on - strand, within GFF1558 at 157.980 kb on - strand, within GFF1558 at 158.141 kb on + strand, within GFF1558 at 158.142 kb on - strand, within GFF1558 at 158.246 kb on + strand, within GFF1558 at 158.246 kb on + strand, within GFF1558 at 158.247 kb on - strand, within GFF1558 at 158.247 kb on - strand, within GFF1558 at 158.447 kb on + strand, within GFF1558 at 158.658 kb on - strand, within GFF1558 at 159.152 kb on + strand, within GFF1558 at 159.215 kb on + strand, within GFF1558 at 159.216 kb on - strand, within GFF1558 at 159.935 kb on + strand, within GFF1558 at 159.936 kb on - strand, within GFF1558 at 159.993 kb on - strand, within GFF1558 at 160.337 kb on + strand, within GFF1558 at 160.337 kb on + strand, within GFF1558 at 160.338 kb on - strand, within GFF1558 at 160.338 kb on - strand, within GFF1558 at 161.277 kb on + strand, within GFF1559 at 161.349 kb on + strand, within GFF1559 at 161.775 kb on + strand at 161.775 kb on + strand at 161.776 kb on - strand at 161.814 kb on + strand at 161.815 kb on - strand at 161.855 kb on + strand at 161.856 kb on - strand at 161.884 kb on + strand at 161.885 kb on - strand at 161.885 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 156,425 + -1.8 156,426 - +0.5 156,426 - -1.7 156,426 - +1.2 156,426 - +2.1 156,558 + -1.7 156,558 + -2.3 156,559 - -0.1 156,601 - +0.2 156,845 + +1.0 156,845 + -1.6 156,846 - -0.4 156,846 - +0.9 156,846 - -4.2 157,052 + GFF1558 0.10 -0.6 157,052 + GFF1558 0.10 -1.1 157,052 + GFF1558 0.10 -0.6 157,053 - GFF1558 0.10 +0.5 157,053 - GFF1558 0.10 -1.6 157,053 - GFF1558 0.10 -2.5 157,418 + GFF1558 0.18 +0.5 157,418 + GFF1558 0.18 +2.4 157,418 + GFF1558 0.18 +1.8 157,418 + GFF1558 0.18 +0.6 157,418 + GFF1558 0.18 +0.8 157,418 + GFF1558 0.18 -1.9 157,418 + GFF1558 0.18 -1.9 157,419 - GFF1558 0.18 +0.5 157,419 - GFF1558 0.18 -1.5 157,419 - GFF1558 0.18 +0.2 157,419 - GFF1558 0.18 +3.7 157,419 - GFF1558 0.18 -1.0 157,667 - GFF1558 0.24 -0.0 157,848 + GFF1558 0.28 -1.9 157,848 + GFF1558 0.28 -0.7 157,848 + GFF1558 0.28 -0.1 157,849 - GFF1558 0.28 -1.4 157,956 - GFF1558 0.31 -2.6 157,980 - GFF1558 0.31 -0.1 157,980 - GFF1558 0.31 +0.8 157,980 - GFF1558 0.31 -0.1 158,141 + GFF1558 0.35 -1.7 158,142 - GFF1558 0.35 +0.1 158,246 + GFF1558 0.37 +1.5 158,246 + GFF1558 0.37 +1.2 158,247 - GFF1558 0.37 -1.4 158,247 - GFF1558 0.37 -0.7 158,447 + GFF1558 0.42 +0.2 158,658 - GFF1558 0.47 -1.4 159,152 + GFF1558 0.58 +0.7 159,215 + GFF1558 0.59 -2.0 159,216 - GFF1558 0.59 -0.8 159,935 + GFF1558 0.76 +1.7 159,936 - GFF1558 0.76 -0.1 159,993 - GFF1558 0.77 +0.8 160,337 + GFF1558 0.85 +1.2 160,337 + GFF1558 0.85 -0.6 160,338 - GFF1558 0.85 +0.5 160,338 - GFF1558 0.85 +0.1 161,277 + GFF1559 0.39 -3.2 161,349 + GFF1559 0.49 -0.8 161,775 + -0.8 161,775 + -2.3 161,776 - -2.4 161,814 + -0.4 161,815 - -2.2 161,855 + -0.1 161,856 - -0.8 161,884 + -1.9 161,885 - -1.8 161,885 - -0.8
Or see this region's nucleotide sequence