Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1394 and GFF1395 are separated by 3 nucleotides GFF1395 and GFF1396 are separated by 175 nucleotides GFF1396 and GFF1397 are separated by 6 nucleotides
GFF1394 - no description, at 742,517 to 743,341
GFF1394
GFF1395 - Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II, at 743,345 to 743,872
GFF1395
GFF1396 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 744,048 to 745,085
GFF1396
GFF1397 - TRAP-type C4-dicarboxylate transport system, large permease component, at 745,092 to 746,990
GFF1397
Position (kb) 744
745
746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 743.076 kb on + strand, within GFF1394 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.457 kb on + strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.458 kb on - strand, within GFF1395 at 743.577 kb on + strand, within GFF1395 at 743.577 kb on + strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.578 kb on - strand, within GFF1395 at 743.784 kb on + strand, within GFF1395 at 743.784 kb on + strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.785 kb on - strand, within GFF1395 at 743.800 kb on - strand, within GFF1395 at 743.830 kb on - strand at 743.830 kb on - strand at 743.891 kb on + strand at 743.925 kb on + strand at 743.925 kb on + strand at 743.925 kb on + strand at 743.934 kb on + strand at 743.935 kb on - strand at 744.133 kb on - strand at 744.274 kb on - strand, within GFF1396 at 744.274 kb on - strand, within GFF1396 at 744.408 kb on + strand, within GFF1396 at 744.408 kb on + strand, within GFF1396 at 744.423 kb on + strand, within GFF1396 at 744.423 kb on + strand, within GFF1396 at 744.423 kb on + strand, within GFF1396 at 744.424 kb on - strand, within GFF1396 at 744.424 kb on - strand, within GFF1396 at 744.424 kb on - strand, within GFF1396 at 744.424 kb on - strand, within GFF1396 at 744.525 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.543 kb on + strand, within GFF1396 at 744.544 kb on - strand, within GFF1396 at 744.544 kb on - strand, within GFF1396 at 744.544 kb on - strand, within GFF1396 at 744.675 kb on + strand, within GFF1396 at 744.675 kb on + strand, within GFF1396 at 744.675 kb on + strand, within GFF1396 at 744.676 kb on - strand, within GFF1396 at 744.676 kb on - strand, within GFF1396 at 744.676 kb on - strand, within GFF1396 at 744.676 kb on - strand, within GFF1396 at 745.036 kb on - strand at 745.036 kb on - strand at 745.207 kb on - strand at 745.269 kb on + strand at 745.270 kb on - strand at 745.506 kb on + strand, within GFF1397 at 745.506 kb on + strand, within GFF1397 at 745.507 kb on - strand, within GFF1397 at 745.507 kb on - strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.545 kb on + strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.546 kb on - strand, within GFF1397 at 745.833 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.866 kb on + strand, within GFF1397 at 745.867 kb on - strand, within GFF1397 at 745.867 kb on - strand, within GFF1397 at 745.867 kb on - strand, within GFF1397
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 743,076 + GFF1394 0.68 -2.0 743,457 + GFF1395 0.21 -1.5 743,457 + GFF1395 0.21 -1.6 743,457 + GFF1395 0.21 -1.1 743,457 + GFF1395 0.21 -1.9 743,458 - GFF1395 0.21 +2.2 743,458 - GFF1395 0.21 +0.5 743,458 - GFF1395 0.21 +2.7 743,458 - GFF1395 0.21 +0.9 743,458 - GFF1395 0.21 +1.0 743,577 + GFF1395 0.44 -1.2 743,577 + GFF1395 0.44 -1.6 743,578 - GFF1395 0.44 -0.9 743,578 - GFF1395 0.44 +0.6 743,578 - GFF1395 0.44 -0.3 743,578 - GFF1395 0.44 +0.6 743,578 - GFF1395 0.44 +0.3 743,784 + GFF1395 0.83 +0.7 743,784 + GFF1395 0.83 -0.9 743,785 - GFF1395 0.83 -1.7 743,785 - GFF1395 0.83 -2.0 743,785 - GFF1395 0.83 +0.8 743,785 - GFF1395 0.83 -1.1 743,785 - GFF1395 0.83 +1.0 743,785 - GFF1395 0.83 +1.5 743,800 - GFF1395 0.86 -2.0 743,830 - +0.7 743,830 - -0.5 743,891 + -2.0 743,925 + +0.6 743,925 + +2.1 743,925 + -3.2 743,934 + -1.3 743,935 - -1.7 744,133 - -0.1 744,274 - GFF1396 0.22 -1.2 744,274 - GFF1396 0.22 -1.1 744,408 + GFF1396 0.35 -0.0 744,408 + GFF1396 0.35 -1.9 744,423 + GFF1396 0.36 -0.9 744,423 + GFF1396 0.36 +0.1 744,423 + GFF1396 0.36 -1.5 744,424 - GFF1396 0.36 -2.0 744,424 - GFF1396 0.36 -0.7 744,424 - GFF1396 0.36 +0.9 744,424 - GFF1396 0.36 -2.3 744,525 + GFF1396 0.46 -1.5 744,543 + GFF1396 0.48 -0.2 744,543 + GFF1396 0.48 -2.7 744,543 + GFF1396 0.48 +1.3 744,543 + GFF1396 0.48 -1.5 744,543 + GFF1396 0.48 +1.7 744,544 - GFF1396 0.48 +0.1 744,544 - GFF1396 0.48 -1.5 744,544 - GFF1396 0.48 -1.1 744,675 + GFF1396 0.60 -1.5 744,675 + GFF1396 0.60 -1.6 744,675 + GFF1396 0.60 -0.4 744,676 - GFF1396 0.61 -2.0 744,676 - GFF1396 0.61 -1.5 744,676 - GFF1396 0.61 -0.9 744,676 - GFF1396 0.61 -0.4 745,036 - -0.3 745,036 - -0.5 745,207 - -2.5 745,269 + -0.1 745,270 - -1.7 745,506 + GFF1397 0.22 +1.2 745,506 + GFF1397 0.22 -0.5 745,507 - GFF1397 0.22 -1.3 745,507 - GFF1397 0.22 -1.5 745,545 + GFF1397 0.24 -0.9 745,545 + GFF1397 0.24 -0.3 745,545 + GFF1397 0.24 -2.7 745,545 + GFF1397 0.24 -2.1 745,545 + GFF1397 0.24 -0.3 745,545 + GFF1397 0.24 -1.6 745,545 + GFF1397 0.24 -1.2 745,545 + GFF1397 0.24 -0.0 745,546 - GFF1397 0.24 -1.5 745,546 - GFF1397 0.24 -1.5 745,546 - GFF1397 0.24 +0.8 745,546 - GFF1397 0.24 -1.3 745,546 - GFF1397 0.24 +0.9 745,546 - GFF1397 0.24 +0.9 745,546 - GFF1397 0.24 +0.2 745,546 - GFF1397 0.24 +0.5 745,833 + GFF1397 0.39 +1.4 745,866 + GFF1397 0.41 -2.7 745,866 + GFF1397 0.41 +0.7 745,866 + GFF1397 0.41 -0.4 745,866 + GFF1397 0.41 -0.3 745,866 + GFF1397 0.41 -0.9 745,866 + GFF1397 0.41 -3.3 745,867 - GFF1397 0.41 +0.1 745,867 - GFF1397 0.41 -2.2 745,867 - GFF1397 0.41 -0.5
Or see this region's nucleotide sequence