Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1389 and GFF1390 overlap by 4 nucleotides GFF1390 and GFF1391 are separated by 137 nucleotides
GFF1389 - Paraquat-inducible protein B, at 735,503 to 737,149
GFF1389
GFF1390 - ortholog of Bordetella pertussis (BX470248) BP2750, at 737,146 to 737,775
GFF1390
GFF1391 - Uncharacterized MFS-type transporter, at 737,913 to 739,493
GFF1391
Position (kb) 737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 736.166 kb on + strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.166 kb on + strand, within GFF1389 at 736.412 kb on + strand, within GFF1389 at 736.412 kb on + strand, within GFF1389 at 736.413 kb on - strand, within GFF1389 at 736.413 kb on - strand, within GFF1389 at 736.694 kb on + strand, within GFF1389 at 736.694 kb on + strand, within GFF1389 at 736.694 kb on + strand, within GFF1389 at 736.694 kb on + strand, within GFF1389 at 736.695 kb on - strand, within GFF1389 at 736.695 kb on - strand, within GFF1389 at 736.695 kb on - strand, within GFF1389 at 737.093 kb on + strand at 737.093 kb on + strand at 737.094 kb on - strand at 737.094 kb on - strand at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.227 kb on + strand, within GFF1390 at 737.228 kb on - strand, within GFF1390 at 737.228 kb on - strand, within GFF1390 at 737.228 kb on - strand, within GFF1390 at 737.228 kb on - strand, within GFF1390 at 737.230 kb on + strand, within GFF1390 at 737.230 kb on + strand, within GFF1390 at 737.230 kb on + strand, within GFF1390 at 737.230 kb on + strand, within GFF1390 at 737.231 kb on - strand, within GFF1390 at 737.299 kb on + strand, within GFF1390 at 737.299 kb on + strand, within GFF1390 at 737.848 kb on - strand at 737.848 kb on - strand at 737.848 kb on - strand at 738.138 kb on + strand, within GFF1391 at 738.138 kb on + strand, within GFF1391 at 738.139 kb on - strand, within GFF1391 at 738.139 kb on - strand, within GFF1391 at 738.139 kb on - strand, within GFF1391 at 738.192 kb on + strand, within GFF1391 at 738.206 kb on + strand, within GFF1391 at 738.207 kb on - strand, within GFF1391 at 738.207 kb on - strand, within GFF1391 at 738.618 kb on + strand, within GFF1391 at 738.619 kb on - strand, within GFF1391 at 738.619 kb on - strand, within GFF1391
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 736,166 + GFF1389 0.40 +0.4 736,166 + GFF1389 0.40 -3.0 736,166 + GFF1389 0.40 -3.3 736,412 + GFF1389 0.55 -1.1 736,412 + GFF1389 0.55 -1.2 736,413 - GFF1389 0.55 +0.1 736,413 - GFF1389 0.55 +1.9 736,694 + GFF1389 0.72 +0.7 736,694 + GFF1389 0.72 -0.7 736,694 + GFF1389 0.72 -2.6 736,694 + GFF1389 0.72 -1.9 736,695 - GFF1389 0.72 -1.6 736,695 - GFF1389 0.72 -1.5 736,695 - GFF1389 0.72 +0.7 737,093 + +0.7 737,093 + +1.3 737,094 - +2.7 737,094 - -0.1 737,227 + GFF1390 0.13 +0.5 737,227 + GFF1390 0.13 +0.1 737,227 + GFF1390 0.13 -1.3 737,227 + GFF1390 0.13 -1.7 737,227 + GFF1390 0.13 -0.6 737,227 + GFF1390 0.13 -2.6 737,228 - GFF1390 0.13 -1.1 737,228 - GFF1390 0.13 -1.1 737,228 - GFF1390 0.13 +1.7 737,228 - GFF1390 0.13 +0.7 737,230 + GFF1390 0.13 -1.2 737,230 + GFF1390 0.13 -1.8 737,230 + GFF1390 0.13 +0.1 737,230 + GFF1390 0.13 -0.3 737,231 - GFF1390 0.13 -2.0 737,299 + GFF1390 0.24 +0.2 737,299 + GFF1390 0.24 -1.5 737,848 - +1.5 737,848 - -0.9 737,848 - -0.9 738,138 + GFF1391 0.14 -0.3 738,138 + GFF1391 0.14 +1.3 738,139 - GFF1391 0.14 +0.7 738,139 - GFF1391 0.14 -1.6 738,139 - GFF1391 0.14 +0.8 738,192 + GFF1391 0.18 +0.5 738,206 + GFF1391 0.19 -0.9 738,207 - GFF1391 0.19 -0.3 738,207 - GFF1391 0.19 -1.0 738,618 + GFF1391 0.45 -1.3 738,619 - GFF1391 0.45 +0.5 738,619 - GFF1391 0.45 +0.2
Or see this region's nucleotide sequence