Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1285 and GFF1286 are separated by 21 nucleotides GFF1286 and GFF1287 overlap by 4 nucleotides GFF1287 and GFF1288 are separated by 0 nucleotides GFF1288 and GFF1289 are separated by 1 nucleotides
GFF1285 - Alkyl hydroperoxide reductase subunit C-like protein, at 613,058 to 613,699
GFF1285
GFF1286 - FIG00932541: hypothetical protein, at 613,721 to 614,296
GFF1286
GFF1287 - Sulfate and thiosulfate binding protein CysP, at 614,293 to 615,309
GFF1287
GFF1288 - Sulfate transport system permease protein CysT, at 615,310 to 616,197
GFF1288
GFF1289 - Sulfate transport system permease protein CysW, at 616,199 to 617,101
GFF1289
Position (kb) 614
615
616 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 613.382 kb on + strand, within GFF1285 at 613.382 kb on + strand, within GFF1285 at 613.382 kb on + strand, within GFF1285 at 613.382 kb on + strand, within GFF1285 at 613.382 kb on + strand, within GFF1285 at 613.383 kb on - strand, within GFF1285 at 613.383 kb on - strand, within GFF1285 at 613.383 kb on - strand, within GFF1285 at 613.383 kb on - strand, within GFF1285 at 613.433 kb on + strand, within GFF1285 at 613.433 kb on + strand, within GFF1285 at 613.433 kb on + strand, within GFF1285 at 613.434 kb on - strand, within GFF1285 at 613.434 kb on - strand, within GFF1285 at 613.434 kb on - strand, within GFF1285 at 613.475 kb on + strand, within GFF1285 at 613.476 kb on - strand, within GFF1285 at 613.476 kb on - strand, within GFF1285 at 613.667 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.697 kb on + strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 613.698 kb on - strand at 614.123 kb on + strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.124 kb on - strand, within GFF1286 at 614.398 kb on + strand, within GFF1287 at 614.398 kb on + strand, within GFF1287 at 614.398 kb on + strand, within GFF1287 at 614.398 kb on + strand, within GFF1287 at 614.420 kb on - strand, within GFF1287 at 614.428 kb on + strand, within GFF1287 at 614.428 kb on + strand, within GFF1287 at 614.429 kb on - strand, within GFF1287 at 614.429 kb on - strand, within GFF1287 at 614.429 kb on - strand, within GFF1287 at 614.452 kb on + strand, within GFF1287 at 614.452 kb on + strand, within GFF1287 at 614.453 kb on - strand, within GFF1287 at 614.453 kb on - strand, within GFF1287 at 614.453 kb on - strand, within GFF1287 at 614.773 kb on + strand, within GFF1287 at 614.773 kb on + strand, within GFF1287 at 614.774 kb on - strand, within GFF1287 at 614.779 kb on + strand, within GFF1287 at 614.780 kb on - strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.797 kb on + strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.798 kb on - strand, within GFF1287 at 614.865 kb on - strand, within GFF1287 at 614.865 kb on - strand, within GFF1287 at 614.961 kb on + strand, within GFF1287 at 614.961 kb on + strand, within GFF1287 at 614.962 kb on - strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.091 kb on + strand, within GFF1287 at 615.092 kb on - strand, within GFF1287 at 615.092 kb on - strand, within GFF1287 at 615.092 kb on - strand, within GFF1287 at 615.106 kb on + strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.107 kb on - strand, within GFF1287 at 615.178 kb on + strand, within GFF1287 at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.289 kb on + strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.290 kb on - strand at 615.291 kb on + strand at 615.291 kb on + strand at 615.307 kb on + strand at 615.307 kb on + strand at 615.433 kb on + strand, within GFF1288 at 615.545 kb on - strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.628 kb on + strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 615.629 kb on - strand, within GFF1288 at 616.000 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.084 kb on + strand, within GFF1288 at 616.085 kb on - strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.090 kb on + strand, within GFF1288 at 616.091 kb on - strand, within GFF1288
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 613,382 + GFF1285 0.50 -1.1 613,382 + GFF1285 0.50 -0.5 613,382 + GFF1285 0.50 -0.5 613,382 + GFF1285 0.50 -0.5 613,382 + GFF1285 0.50 -0.3 613,383 - GFF1285 0.51 -3.1 613,383 - GFF1285 0.51 -2.7 613,383 - GFF1285 0.51 +1.5 613,383 - GFF1285 0.51 +3.5 613,433 + GFF1285 0.58 +0.2 613,433 + GFF1285 0.58 +0.3 613,433 + GFF1285 0.58 -1.3 613,434 - GFF1285 0.59 -0.6 613,434 - GFF1285 0.59 +1.1 613,434 - GFF1285 0.59 -1.9 613,475 + GFF1285 0.65 -0.9 613,476 - GFF1285 0.65 -1.5 613,476 - GFF1285 0.65 -1.3 613,667 + -0.0 613,697 + +0.4 613,697 + -1.7 613,697 + +1.0 613,697 + -1.3 613,697 + -0.4 613,697 + -0.9 613,698 - -0.3 613,698 - -0.8 613,698 - -1.9 613,698 - -1.2 613,698 - -0.3 613,698 - -0.2 613,698 - +0.1 613,698 - -0.1 613,698 - -0.1 613,698 - -0.3 613,698 - -2.5 614,123 + GFF1286 0.70 -0.4 614,124 - GFF1286 0.70 -3.4 614,124 - GFF1286 0.70 -0.5 614,124 - GFF1286 0.70 -2.1 614,124 - GFF1286 0.70 +0.2 614,124 - GFF1286 0.70 -1.6 614,124 - GFF1286 0.70 -0.2 614,124 - GFF1286 0.70 +0.7 614,124 - GFF1286 0.70 -2.7 614,398 + GFF1287 0.10 -2.5 614,398 + GFF1287 0.10 -1.3 614,398 + GFF1287 0.10 -0.3 614,398 + GFF1287 0.10 +0.3 614,420 - GFF1287 0.12 -1.3 614,428 + GFF1287 0.13 -2.1 614,428 + GFF1287 0.13 -0.9 614,429 - GFF1287 0.13 -3.9 614,429 - GFF1287 0.13 -1.3 614,429 - GFF1287 0.13 +1.4 614,452 + GFF1287 0.16 -1.6 614,452 + GFF1287 0.16 -0.5 614,453 - GFF1287 0.16 -0.7 614,453 - GFF1287 0.16 -2.4 614,453 - GFF1287 0.16 -1.0 614,773 + GFF1287 0.47 -1.5 614,773 + GFF1287 0.47 -4.0 614,774 - GFF1287 0.47 -1.5 614,779 + GFF1287 0.48 -1.3 614,780 - GFF1287 0.48 +1.7 614,797 + GFF1287 0.50 +0.4 614,797 + GFF1287 0.50 -1.5 614,797 + GFF1287 0.50 -3.0 614,797 + GFF1287 0.50 -2.6 614,797 + GFF1287 0.50 +0.5 614,797 + GFF1287 0.50 -0.9 614,797 + GFF1287 0.50 -1.1 614,797 + GFF1287 0.50 -0.1 614,798 - GFF1287 0.50 +0.0 614,798 - GFF1287 0.50 -2.8 614,798 - GFF1287 0.50 -0.9 614,798 - GFF1287 0.50 +0.1 614,865 - GFF1287 0.56 -1.1 614,865 - GFF1287 0.56 -4.1 614,961 + GFF1287 0.66 -0.6 614,961 + GFF1287 0.66 -2.6 614,962 - GFF1287 0.66 -0.1 615,091 + GFF1287 0.78 +2.1 615,091 + GFF1287 0.78 +0.1 615,091 + GFF1287 0.78 +0.4 615,091 + GFF1287 0.78 -0.1 615,092 - GFF1287 0.79 -2.6 615,092 - GFF1287 0.79 -0.4 615,092 - GFF1287 0.79 -0.9 615,106 + GFF1287 0.80 -0.6 615,107 - GFF1287 0.80 -2.4 615,107 - GFF1287 0.80 -1.1 615,107 - GFF1287 0.80 -1.3 615,107 - GFF1287 0.80 -3.2 615,107 - GFF1287 0.80 -1.5 615,178 + GFF1287 0.87 -1.8 615,289 + +1.2 615,289 + -0.6 615,289 + -2.3 615,289 + -0.3 615,290 - +0.2 615,290 - -1.2 615,290 - +0.5 615,290 - -1.9 615,290 - -1.5 615,291 + -2.0 615,291 + +0.0 615,307 + -0.2 615,307 + -0.6 615,433 + GFF1288 0.14 -2.7 615,545 - GFF1288 0.26 -0.9 615,628 + GFF1288 0.36 -0.9 615,628 + GFF1288 0.36 -1.5 615,629 - GFF1288 0.36 -1.3 615,629 - GFF1288 0.36 -1.1 616,000 + GFF1288 0.78 +0.9 616,084 + GFF1288 0.87 -0.1 616,084 + GFF1288 0.87 -1.1 616,085 - GFF1288 0.87 -0.7 616,090 + GFF1288 0.88 -1.7 616,090 + GFF1288 0.88 -1.6 616,091 - GFF1288 0.88 -1.6
Or see this region's nucleotide sequence