Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1216 and GFF1217 overlap by 4 nucleotides GFF1217 and GFF1218 are separated by 207 nucleotides
GFF1216 - Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase, at 536,171 to 537,142
GFF1216
GFF1217 - Transcriptional regulator RpiR in protein degradation cluster, at 537,139 to 538,140
GFF1217
GFF1218 - O-antigen acetylase, at 538,348 to 539,502
GFF1218
Position (kb) 537
538
539 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.223 kb on + strand at 536.224 kb on - strand at 536.224 kb on - strand at 536.224 kb on - strand at 536.224 kb on - strand at 536.383 kb on - strand, within GFF1216 at 536.383 kb on - strand, within GFF1216 at 536.454 kb on + strand, within GFF1216 at 536.454 kb on + strand, within GFF1216 at 536.455 kb on - strand, within GFF1216 at 536.455 kb on - strand, within GFF1216 at 536.455 kb on - strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.825 kb on + strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 536.826 kb on - strand, within GFF1216 at 537.051 kb on + strand at 537.052 kb on - strand at 537.052 kb on - strand at 537.052 kb on - strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.231 kb on + strand at 537.232 kb on - strand at 537.232 kb on - strand at 537.232 kb on - strand at 537.232 kb on - strand at 537.401 kb on + strand, within GFF1217 at 537.401 kb on + strand, within GFF1217 at 537.402 kb on - strand, within GFF1217 at 537.537 kb on - strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.711 kb on - strand, within GFF1217 at 537.711 kb on - strand, within GFF1217 at 537.761 kb on + strand, within GFF1217 at 537.761 kb on + strand, within GFF1217 at 537.761 kb on + strand, within GFF1217 at 537.762 kb on - strand, within GFF1217 at 537.762 kb on - strand, within GFF1217 at 537.927 kb on - strand, within GFF1217 at 537.927 kb on - strand, within GFF1217 at 538.043 kb on + strand at 538.043 kb on + strand at 538.043 kb on + strand at 538.043 kb on + strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.193 kb on + strand at 538.243 kb on - strand at 538.243 kb on - strand at 538.311 kb on + strand at 538.311 kb on + strand at 538.312 kb on - strand at 538.312 kb on - strand at 538.312 kb on - strand at 538.312 kb on - strand at 538.312 kb on - strand at 538.334 kb on + strand at 538.334 kb on + strand at 538.453 kb on + strand at 538.453 kb on + strand at 538.528 kb on + strand, within GFF1218 at 538.528 kb on + strand, within GFF1218 at 538.528 kb on + strand, within GFF1218 at 538.529 kb on - strand, within GFF1218 at 538.561 kb on + strand, within GFF1218 at 538.562 kb on - strand, within GFF1218 at 538.562 kb on - strand, within GFF1218 at 538.591 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.628 kb on - strand, within GFF1218 at 538.628 kb on - strand, within GFF1218 at 538.628 kb on - strand, within GFF1218 at 538.628 kb on - strand, within GFF1218 at 538.825 kb on + strand, within GFF1218 at 538.825 kb on + strand, within GFF1218 at 538.825 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.870 kb on + strand, within GFF1218 at 538.870 kb on + strand, within GFF1218 at 538.870 kb on + strand, within GFF1218 at 538.870 kb on + strand, within GFF1218 at 538.871 kb on - strand, within GFF1218 at 538.871 kb on - strand, within GFF1218 at 538.928 kb on + strand, within GFF1218 at 538.929 kb on - strand, within GFF1218 at 538.929 kb on - strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.001 kb on - strand, within GFF1218 at 539.131 kb on + strand, within GFF1218 at 539.131 kb on + strand, within GFF1218 at 539.131 kb on + strand, within GFF1218 at 539.132 kb on - strand, within GFF1218 at 539.132 kb on - strand, within GFF1218 at 539.132 kb on - strand, within GFF1218
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 536,223 + -0.0 536,223 + +1.7 536,223 + +1.0 536,223 + +1.6 536,223 + -0.8 536,223 + -0.8 536,223 + +0.6 536,224 - +1.0 536,224 - -2.1 536,224 - -0.8 536,224 - +1.1 536,383 - GFF1216 0.22 +1.0 536,383 - GFF1216 0.22 +0.7 536,454 + GFF1216 0.29 -1.3 536,454 + GFF1216 0.29 -0.3 536,455 - GFF1216 0.29 -1.3 536,455 - GFF1216 0.29 -2.9 536,455 - GFF1216 0.29 -1.6 536,825 + GFF1216 0.67 -0.1 536,825 + GFF1216 0.67 -1.7 536,825 + GFF1216 0.67 +1.1 536,825 + GFF1216 0.67 -0.8 536,825 + GFF1216 0.67 +0.7 536,826 - GFF1216 0.67 -0.7 536,826 - GFF1216 0.67 +0.8 536,826 - GFF1216 0.67 -0.6 536,826 - GFF1216 0.67 +0.7 536,826 - GFF1216 0.67 -1.3 537,051 + -2.3 537,052 - +0.7 537,052 - -1.5 537,052 - -2.6 537,231 + -1.1 537,231 + +0.1 537,231 + +0.0 537,231 + +0.3 537,231 + +1.6 537,231 + +0.3 537,232 - +0.8 537,232 - -2.5 537,232 - -1.1 537,232 - -1.1 537,401 + GFF1217 0.26 +1.3 537,401 + GFF1217 0.26 -1.2 537,402 - GFF1217 0.26 -0.1 537,537 - GFF1217 0.40 -1.4 537,710 + GFF1217 0.57 -1.1 537,710 + GFF1217 0.57 +1.7 537,710 + GFF1217 0.57 -0.6 537,710 + GFF1217 0.57 +0.2 537,711 - GFF1217 0.57 -0.2 537,711 - GFF1217 0.57 -0.8 537,761 + GFF1217 0.62 -0.6 537,761 + GFF1217 0.62 +1.7 537,761 + GFF1217 0.62 +1.2 537,762 - GFF1217 0.62 +0.2 537,762 - GFF1217 0.62 -4.1 537,927 - GFF1217 0.79 +1.1 537,927 - GFF1217 0.79 -1.6 538,043 + +1.1 538,043 + -2.1 538,043 + +1.6 538,043 + -0.2 538,044 - -2.8 538,044 - -2.3 538,044 - -1.4 538,044 - -0.3 538,044 - -0.8 538,044 - -1.3 538,193 + -1.0 538,243 - +0.6 538,243 - +0.7 538,311 + -1.7 538,311 + -1.1 538,312 - +0.2 538,312 - -1.1 538,312 - +0.8 538,312 - +3.6 538,312 - -1.6 538,334 + -0.6 538,334 + -1.6 538,453 + -0.1 538,453 + -0.2 538,528 + GFF1218 0.16 -2.1 538,528 + GFF1218 0.16 +0.2 538,528 + GFF1218 0.16 -1.0 538,529 - GFF1218 0.16 -0.3 538,561 + GFF1218 0.18 -0.8 538,562 - GFF1218 0.19 +2.2 538,562 - GFF1218 0.19 -1.4 538,591 + GFF1218 0.21 -0.4 538,627 + GFF1218 0.24 -3.0 538,627 + GFF1218 0.24 +0.9 538,627 + GFF1218 0.24 -0.9 538,627 + GFF1218 0.24 -2.1 538,627 + GFF1218 0.24 +0.1 538,628 - GFF1218 0.24 +1.6 538,628 - GFF1218 0.24 -3.0 538,628 - GFF1218 0.24 -1.3 538,628 - GFF1218 0.24 +0.0 538,825 + GFF1218 0.41 -3.1 538,825 + GFF1218 0.41 +1.2 538,825 + GFF1218 0.41 -0.2 538,840 + GFF1218 0.43 +0.7 538,840 + GFF1218 0.43 +1.4 538,840 + GFF1218 0.43 -2.2 538,840 + GFF1218 0.43 +0.6 538,840 + GFF1218 0.43 +0.7 538,840 + GFF1218 0.43 -2.3 538,840 + GFF1218 0.43 -0.3 538,840 + GFF1218 0.43 -1.7 538,841 - GFF1218 0.43 +0.8 538,841 - GFF1218 0.43 +1.0 538,841 - GFF1218 0.43 -2.8 538,841 - GFF1218 0.43 +1.9 538,841 - GFF1218 0.43 +2.5 538,841 - GFF1218 0.43 -0.3 538,870 + GFF1218 0.45 +1.9 538,870 + GFF1218 0.45 +0.5 538,870 + GFF1218 0.45 -1.3 538,870 + GFF1218 0.45 +0.2 538,871 - GFF1218 0.45 -1.6 538,871 - GFF1218 0.45 +1.2 538,928 + GFF1218 0.50 -1.4 538,929 - GFF1218 0.50 +0.6 538,929 - GFF1218 0.50 +0.4 538,990 + GFF1218 0.56 -0.9 538,990 + GFF1218 0.56 +0.0 538,990 + GFF1218 0.56 -0.7 538,990 + GFF1218 0.56 -2.1 538,990 + GFF1218 0.56 +1.0 538,990 + GFF1218 0.56 +0.7 538,990 + GFF1218 0.56 -2.1 538,990 + GFF1218 0.56 +1.7 538,991 - GFF1218 0.56 +0.4 538,991 - GFF1218 0.56 -1.8 538,991 - GFF1218 0.56 +2.2 538,991 - GFF1218 0.56 -1.1 538,991 - GFF1218 0.56 -1.4 538,999 + GFF1218 0.56 +0.6 538,999 + GFF1218 0.56 -1.8 538,999 + GFF1218 0.56 +1.2 538,999 + GFF1218 0.56 +0.4 538,999 + GFF1218 0.56 -1.6 538,999 + GFF1218 0.56 -0.7 538,999 + GFF1218 0.56 -0.1 538,999 + GFF1218 0.56 +0.1 538,999 + GFF1218 0.56 -2.8 538,999 + GFF1218 0.56 -0.0 538,999 + GFF1218 0.56 -1.1 538,999 + GFF1218 0.56 +0.6 538,999 + GFF1218 0.56 +0.7 538,999 + GFF1218 0.56 +0.1 538,999 + GFF1218 0.56 +0.3 539,000 - GFF1218 0.56 -1.8 539,000 - GFF1218 0.56 +1.2 539,000 - GFF1218 0.56 -0.3 539,000 - GFF1218 0.56 -2.9 539,000 - GFF1218 0.56 +0.2 539,000 - GFF1218 0.56 -0.3 539,000 - GFF1218 0.56 -2.8 539,001 - GFF1218 0.57 -0.8 539,131 + GFF1218 0.68 +0.2 539,131 + GFF1218 0.68 +0.8 539,131 + GFF1218 0.68 +2.2 539,132 - GFF1218 0.68 -1.8 539,132 - GFF1218 0.68 +0.9 539,132 - GFF1218 0.68 -2.3
Or see this region's nucleotide sequence