Strain Fitness in Variovorax sp. SCN45 around GFF1209

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1207 and GFF1208 are separated by 94 nucleotidesGFF1208 and GFF1209 are separated by 206 nucleotidesGFF1209 and GFF1210 are separated by 15 nucleotidesGFF1210 and GFF1211 are separated by 23 nucleotides GFF1207 - no description, at 525,483 to 525,824 GFF1207 GFF1208 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 525,919 to 526,611 GFF1208 GFF1209 - hypothetical protein, at 526,818 to 528,755 GFF1209 GFF1210 - D-aminopeptidase dipeptide-binding protein DppA (EC 3.4.11.-), at 528,771 to 529,589 GFF1210 GFF1211 - D-aminopeptidase (EC 3.4.11.19), at 529,613 to 530,695 GFF1211 Position (kb) 526 527 528 529Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 525.920 kb on + strandat 525.921 kb on - strandat 526.055 kb on + strand, within GFF1208at 526.055 kb on + strand, within GFF1208at 526.055 kb on + strand, within GFF1208at 526.055 kb on + strand, within GFF1208at 526.056 kb on - strand, within GFF1208at 526.056 kb on - strand, within GFF1208at 526.064 kb on + strand, within GFF1208at 526.064 kb on + strand, within GFF1208at 526.064 kb on + strand, within GFF1208at 526.065 kb on - strand, within GFF1208at 526.065 kb on - strand, within GFF1208at 526.316 kb on + strand, within GFF1208at 526.316 kb on + strand, within GFF1208at 526.316 kb on + strand, within GFF1208at 526.316 kb on + strand, within GFF1208at 526.317 kb on - strand, within GFF1208at 526.317 kb on - strand, within GFF1208at 526.317 kb on - strand, within GFF1208at 526.317 kb on - strand, within GFF1208at 526.317 kb on - strand, within GFF1208at 526.317 kb on - strand, within GFF1208at 526.319 kb on + strand, within GFF1208at 526.319 kb on + strand, within GFF1208at 526.320 kb on - strand, within GFF1208at 526.320 kb on - strand, within GFF1208at 526.320 kb on - strand, within GFF1208at 526.320 kb on - strand, within GFF1208at 526.459 kb on + strand, within GFF1208at 526.460 kb on - strand, within GFF1208at 526.460 kb on - strand, within GFF1208at 526.460 kb on - strand, within GFF1208at 526.490 kb on + strand, within GFF1208at 526.490 kb on + strand, within GFF1208at 526.490 kb on + strand, within GFF1208at 526.490 kb on + strand, within GFF1208at 526.491 kb on - strand, within GFF1208at 526.491 kb on - strand, within GFF1208at 526.491 kb on - strand, within GFF1208at 526.491 kb on - strand, within GFF1208at 526.704 kb on + strandat 526.705 kb on - strandat 526.705 kb on - strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.722 kb on + strandat 526.723 kb on - strandat 526.962 kb on + strandat 526.962 kb on + strandat 526.963 kb on - strandat 527.071 kb on - strand, within GFF1209at 527.268 kb on + strand, within GFF1209at 527.268 kb on + strand, within GFF1209at 527.268 kb on + strand, within GFF1209at 527.269 kb on - strand, within GFF1209at 527.269 kb on - strand, within GFF1209at 527.292 kb on + strand, within GFF1209at 527.302 kb on - strand, within GFF1209at 527.388 kb on + strand, within GFF1209at 527.388 kb on + strand, within GFF1209at 527.389 kb on - strand, within GFF1209at 527.389 kb on - strand, within GFF1209at 527.397 kb on + strand, within GFF1209at 527.398 kb on - strand, within GFF1209at 527.398 kb on - strand, within GFF1209at 527.398 kb on - strand, within GFF1209at 527.519 kb on - strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.772 kb on + strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.773 kb on - strand, within GFF1209at 527.775 kb on + strand, within GFF1209at 527.775 kb on + strand, within GFF1209at 527.775 kb on + strand, within GFF1209at 527.776 kb on - strand, within GFF1209at 527.776 kb on - strand, within GFF1209at 527.776 kb on - strand, within GFF1209at 527.904 kb on + strand, within GFF1209at 528.267 kb on + strand, within GFF1209at 528.267 kb on + strand, within GFF1209at 528.268 kb on - strand, within GFF1209at 528.657 kb on + strandat 528.657 kb on + strandat 528.658 kb on - strandat 529.177 kb on + strand, within GFF1210at 529.178 kb on - strand, within GFF1210at 529.282 kb on + strand, within GFF1210at 529.283 kb on - strand, within GFF1210at 529.508 kb on - strandat 529.508 kb on - strandat 529.543 kb on + strandat 529.543 kb on + strandat 529.544 kb on - strandat 529.544 kb on - strandat 529.544 kb on - strandat 529.544 kb on - strandat 529.544 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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525,920 + -1.1
525,921 - -1.1
526,055 + GFF1208 0.20 -1.1
526,055 + GFF1208 0.20 -2.1
526,055 + GFF1208 0.20 -1.6
526,055 + GFF1208 0.20 -1.1
526,056 - GFF1208 0.20 -2.5
526,056 - GFF1208 0.20 +0.0
526,064 + GFF1208 0.21 +0.2
526,064 + GFF1208 0.21 -0.6
526,064 + GFF1208 0.21 +0.8
526,065 - GFF1208 0.21 -0.6
526,065 - GFF1208 0.21 -3.9
526,316 + GFF1208 0.57 -0.5
526,316 + GFF1208 0.57 +0.8
526,316 + GFF1208 0.57 +1.2
526,316 + GFF1208 0.57 -3.2
526,317 - GFF1208 0.57 -1.3
526,317 - GFF1208 0.57 +1.3
526,317 - GFF1208 0.57 -0.5
526,317 - GFF1208 0.57 +1.4
526,317 - GFF1208 0.57 +0.8
526,317 - GFF1208 0.57 -1.6
526,319 + GFF1208 0.58 -0.6
526,319 + GFF1208 0.58 -0.3
526,320 - GFF1208 0.58 +0.4
526,320 - GFF1208 0.58 -0.3
526,320 - GFF1208 0.58 +4.0
526,320 - GFF1208 0.58 +0.2
526,459 + GFF1208 0.78 +0.3
526,460 - GFF1208 0.78 -1.6
526,460 - GFF1208 0.78 -1.4
526,460 - GFF1208 0.78 -0.6
526,490 + GFF1208 0.82 -2.3
526,490 + GFF1208 0.82 +0.0
526,490 + GFF1208 0.82 -2.1
526,490 + GFF1208 0.82 -0.1
526,491 - GFF1208 0.83 -3.2
526,491 - GFF1208 0.83 -1.4
526,491 - GFF1208 0.83 +1.7
526,491 - GFF1208 0.83 +2.5
526,704 + +0.5
526,705 - -0.6
526,705 - -1.7
526,722 + -1.1
526,722 + -1.4
526,722 + -1.0
526,723 - -2.6
526,962 + -0.3
526,962 + -0.4
526,963 - -0.4
527,071 - GFF1209 0.13 +1.1
527,268 + GFF1209 0.23 +0.1
527,268 + GFF1209 0.23 -1.1
527,268 + GFF1209 0.23 -1.1
527,269 - GFF1209 0.23 +0.4
527,269 - GFF1209 0.23 +0.3
527,292 + GFF1209 0.24 -2.1
527,302 - GFF1209 0.25 +0.7
527,388 + GFF1209 0.29 -0.9
527,388 + GFF1209 0.29 -1.6
527,389 - GFF1209 0.29 -1.1
527,389 - GFF1209 0.29 -0.8
527,397 + GFF1209 0.30 -0.2
527,398 - GFF1209 0.30 -0.8
527,398 - GFF1209 0.30 -1.1
527,398 - GFF1209 0.30 -1.3
527,519 - GFF1209 0.36 +0.3
527,772 + GFF1209 0.49 -1.0
527,772 + GFF1209 0.49 -2.2
527,772 + GFF1209 0.49 -1.2
527,772 + GFF1209 0.49 +0.7
527,772 + GFF1209 0.49 -1.3
527,772 + GFF1209 0.49 -1.4
527,772 + GFF1209 0.49 -0.3
527,773 - GFF1209 0.49 +1.1
527,773 - GFF1209 0.49 +0.6
527,773 - GFF1209 0.49 +2.0
527,773 - GFF1209 0.49 -2.5
527,773 - GFF1209 0.49 -0.0
527,775 + GFF1209 0.49 -1.0
527,775 + GFF1209 0.49 -2.0
527,775 + GFF1209 0.49 -0.3
527,776 - GFF1209 0.49 -1.1
527,776 - GFF1209 0.49 -0.0
527,776 - GFF1209 0.49 -2.4
527,904 + GFF1209 0.56 +1.2
528,267 + GFF1209 0.75 +0.2
528,267 + GFF1209 0.75 -1.3
528,268 - GFF1209 0.75 -0.2
528,657 + -0.8
528,657 + -1.4
528,658 - -0.9
529,177 + GFF1210 0.50 +1.6
529,178 - GFF1210 0.50 +1.3
529,282 + GFF1210 0.62 +0.7
529,283 - GFF1210 0.63 -0.1
529,508 - +0.6
529,508 - +1.4
529,543 + -2.2
529,543 + +4.4
529,544 - -2.3
529,544 - +0.9
529,544 - -1.0
529,544 - +2.4
529,544 - +0.8

Or see this region's nucleotide sequence