Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1185 and GFF1186 are separated by 544 nucleotides GFF1186 and GFF1187 are separated by 5 nucleotides GFF1187 and GFF1188 overlap by 4 nucleotides
GFF1185 - Transcriptional regulator, AraC family, at 501,221 to 502,084
GFF1185
GFF1186 - Ferrichrome-iron receptor, at 502,629 to 504,782
GFF1186
GFF1187 - Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3), at 504,788 to 505,729
GFF1187
GFF1188 - Thiazole synthase (EC 2.8.1.10), at 505,726 to 506,541
GFF1188
Position (kb) 502
503
504
505 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 501.820 kb on - strand, within GFF1185 at 501.939 kb on + strand, within GFF1185 at 501.940 kb on - strand, within GFF1185 at 502.056 kb on + strand at 502.056 kb on + strand at 502.056 kb on + strand at 502.057 kb on - strand at 502.057 kb on - strand at 502.263 kb on + strand at 502.263 kb on + strand at 502.263 kb on + strand at 502.263 kb on + strand at 502.270 kb on + strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.271 kb on - strand at 502.286 kb on + strand at 502.286 kb on + strand at 502.287 kb on - strand at 502.287 kb on - strand at 502.298 kb on + strand at 502.298 kb on + strand at 502.299 kb on - strand at 502.299 kb on - strand at 502.316 kb on - strand at 502.320 kb on + strand at 502.321 kb on - strand at 502.321 kb on - strand at 502.321 kb on - strand at 502.322 kb on + strand at 502.322 kb on + strand at 502.322 kb on + strand at 502.323 kb on - strand at 502.323 kb on - strand at 502.426 kb on + strand at 502.426 kb on + strand at 502.426 kb on + strand at 502.426 kb on + strand at 502.427 kb on - strand at 502.427 kb on - strand at 502.437 kb on + strand at 502.438 kb on - strand at 502.438 kb on - strand at 502.438 kb on - strand at 502.438 kb on - strand at 502.503 kb on - strand at 502.503 kb on - strand at 502.503 kb on - strand at 502.562 kb on - strand at 502.685 kb on - strand at 502.685 kb on - strand at 502.685 kb on - strand at 502.685 kb on - strand at 502.703 kb on - strand at 502.703 kb on - strand at 502.789 kb on + strand at 502.790 kb on - strand at 502.790 kb on - strand at 502.868 kb on - strand, within GFF1186 at 503.114 kb on - strand, within GFF1186 at 503.258 kb on - strand, within GFF1186 at 503.314 kb on + strand, within GFF1186 at 503.314 kb on + strand, within GFF1186 at 503.314 kb on + strand, within GFF1186 at 503.315 kb on - strand, within GFF1186 at 503.315 kb on - strand, within GFF1186 at 503.315 kb on - strand, within GFF1186 at 503.315 kb on - strand, within GFF1186 at 503.341 kb on + strand, within GFF1186 at 503.341 kb on + strand, within GFF1186 at 503.342 kb on - strand, within GFF1186 at 503.342 kb on - strand, within GFF1186 at 503.380 kb on + strand, within GFF1186 at 503.380 kb on + strand, within GFF1186 at 503.380 kb on + strand, within GFF1186 at 503.380 kb on + strand, within GFF1186 at 503.380 kb on + strand, within GFF1186 at 503.380 kb on + strand, within GFF1186 at 503.380 kb on + strand, within GFF1186 at 503.380 kb on + strand, within GFF1186 at 503.381 kb on - strand, within GFF1186 at 503.381 kb on - strand, within GFF1186 at 503.497 kb on + strand, within GFF1186 at 503.590 kb on + strand, within GFF1186 at 503.590 kb on + strand, within GFF1186 at 503.590 kb on + strand, within GFF1186 at 503.590 kb on + strand, within GFF1186 at 503.590 kb on + strand, within GFF1186 at 503.591 kb on - strand, within GFF1186 at 503.591 kb on - strand, within GFF1186 at 503.596 kb on + strand, within GFF1186 at 503.596 kb on + strand, within GFF1186 at 503.596 kb on + strand, within GFF1186 at 503.596 kb on + strand, within GFF1186 at 503.596 kb on + strand, within GFF1186 at 503.597 kb on - strand, within GFF1186 at 503.597 kb on - strand, within GFF1186 at 503.597 kb on - strand, within GFF1186 at 503.597 kb on - strand, within GFF1186 at 503.597 kb on - strand, within GFF1186 at 503.597 kb on - strand, within GFF1186 at 503.744 kb on - strand, within GFF1186 at 503.771 kb on - strand, within GFF1186 at 503.779 kb on + strand, within GFF1186 at 503.779 kb on + strand, within GFF1186 at 503.779 kb on + strand, within GFF1186 at 503.780 kb on - strand, within GFF1186 at 503.780 kb on - strand, within GFF1186 at 503.780 kb on - strand, within GFF1186 at 503.780 kb on - strand, within GFF1186 at 503.810 kb on - strand, within GFF1186 at 503.873 kb on + strand, within GFF1186 at 503.944 kb on - strand, within GFF1186 at 504.001 kb on + strand, within GFF1186 at 504.286 kb on + strand, within GFF1186 at 504.286 kb on + strand, within GFF1186 at 504.287 kb on - strand, within GFF1186 at 504.287 kb on - strand, within GFF1186 at 504.287 kb on - strand, within GFF1186 at 504.287 kb on - strand, within GFF1186 at 504.287 kb on - strand, within GFF1186 at 504.287 kb on - strand, within GFF1186 at 504.287 kb on - strand, within GFF1186 at 504.362 kb on - strand, within GFF1186 at 504.457 kb on + strand, within GFF1186 at 504.457 kb on + strand, within GFF1186 at 504.457 kb on + strand, within GFF1186 at 504.457 kb on + strand, within GFF1186 at 504.457 kb on + strand, within GFF1186 at 504.457 kb on + strand, within GFF1186 at 504.458 kb on - strand, within GFF1186 at 504.467 kb on - strand, within GFF1186 at 504.481 kb on + strand, within GFF1186 at 504.481 kb on + strand, within GFF1186 at 504.481 kb on + strand, within GFF1186 at 504.481 kb on + strand, within GFF1186 at 504.482 kb on - strand, within GFF1186 at 504.482 kb on - strand, within GFF1186 at 504.482 kb on - strand, within GFF1186 at 504.482 kb on - strand, within GFF1186 at 504.482 kb on - strand, within GFF1186 at 504.774 kb on + strand at 504.774 kb on + strand at 504.774 kb on + strand at 504.975 kb on + strand, within GFF1187 at 505.035 kb on + strand, within GFF1187 at 505.037 kb on + strand, within GFF1187 at 505.038 kb on - strand, within GFF1187 at 505.038 kb on - strand, within GFF1187 at 505.038 kb on - strand, within GFF1187 at 505.038 kb on - strand, within GFF1187 at 505.056 kb on + strand, within GFF1187 at 505.056 kb on + strand, within GFF1187 at 505.056 kb on + strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.096 kb on - strand, within GFF1187 at 505.096 kb on - strand, within GFF1187 at 505.197 kb on + strand, within GFF1187 at 505.240 kb on - strand, within GFF1187 at 505.392 kb on + strand, within GFF1187 at 505.392 kb on + strand, within GFF1187 at 505.393 kb on - strand, within GFF1187 at 505.602 kb on + strand, within GFF1187 at 505.602 kb on + strand, within GFF1187 at 505.603 kb on - strand, within GFF1187
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 501,820 - GFF1185 0.69 -1.5 501,939 + GFF1185 0.83 -2.7 501,940 - GFF1185 0.83 +2.1 502,056 + +0.1 502,056 + -2.7 502,056 + +1.3 502,057 - -1.6 502,057 - -0.8 502,263 + +0.3 502,263 + -1.5 502,263 + -0.3 502,263 + -0.2 502,270 + -1.4 502,271 - +0.2 502,271 - -1.1 502,271 - -0.6 502,271 - -1.6 502,271 - -0.9 502,271 - -0.3 502,286 + -1.3 502,286 + -3.2 502,287 - +0.2 502,287 - -0.8 502,298 + -0.6 502,298 + -0.8 502,299 - -2.1 502,299 - -2.3 502,316 - +0.4 502,320 + +0.2 502,321 - +1.3 502,321 - -2.7 502,321 - +1.5 502,322 + -0.3 502,322 + -0.7 502,322 + -0.3 502,323 - -4.5 502,323 - -0.6 502,426 + +2.6 502,426 + -1.8 502,426 + -2.7 502,426 + +1.9 502,427 - -0.8 502,427 - -1.8 502,437 + -0.2 502,438 - +0.3 502,438 - -0.8 502,438 - -0.8 502,438 - -2.4 502,503 - -1.3 502,503 - -1.1 502,503 - -2.1 502,562 - +0.7 502,685 - -2.8 502,685 - +0.5 502,685 - -1.1 502,685 - -1.6 502,703 - -0.3 502,703 - -1.1 502,789 + -0.6 502,790 - +1.0 502,790 - -0.2 502,868 - GFF1186 0.11 +1.6 503,114 - GFF1186 0.23 +0.4 503,258 - GFF1186 0.29 +1.7 503,314 + GFF1186 0.32 -1.6 503,314 + GFF1186 0.32 +0.1 503,314 + GFF1186 0.32 -1.6 503,315 - GFF1186 0.32 -2.4 503,315 - GFF1186 0.32 +0.2 503,315 - GFF1186 0.32 -1.6 503,315 - GFF1186 0.32 -0.7 503,341 + GFF1186 0.33 +1.0 503,341 + GFF1186 0.33 +0.0 503,342 - GFF1186 0.33 -0.3 503,342 - GFF1186 0.33 -2.4 503,380 + GFF1186 0.35 -2.0 503,380 + GFF1186 0.35 -0.3 503,380 + GFF1186 0.35 -0.5 503,380 + GFF1186 0.35 +1.0 503,380 + GFF1186 0.35 +0.3 503,380 + GFF1186 0.35 -2.3 503,380 + GFF1186 0.35 -0.5 503,380 + GFF1186 0.35 -3.7 503,381 - GFF1186 0.35 +2.1 503,381 - GFF1186 0.35 +0.6 503,497 + GFF1186 0.40 -1.3 503,590 + GFF1186 0.45 -0.8 503,590 + GFF1186 0.45 -1.3 503,590 + GFF1186 0.45 -0.7 503,590 + GFF1186 0.45 -1.1 503,590 + GFF1186 0.45 -1.6 503,591 - GFF1186 0.45 -0.5 503,591 - GFF1186 0.45 -1.4 503,596 + GFF1186 0.45 +1.4 503,596 + GFF1186 0.45 -1.6 503,596 + GFF1186 0.45 -0.8 503,596 + GFF1186 0.45 +0.2 503,596 + GFF1186 0.45 +1.0 503,597 - GFF1186 0.45 +0.5 503,597 - GFF1186 0.45 -0.3 503,597 - GFF1186 0.45 +3.2 503,597 - GFF1186 0.45 +0.0 503,597 - GFF1186 0.45 +2.1 503,597 - GFF1186 0.45 +1.7 503,744 - GFF1186 0.52 +1.2 503,771 - GFF1186 0.53 +0.9 503,779 + GFF1186 0.53 -0.5 503,779 + GFF1186 0.53 -0.8 503,779 + GFF1186 0.53 -1.7 503,780 - GFF1186 0.53 -1.7 503,780 - GFF1186 0.53 -2.8 503,780 - GFF1186 0.53 -1.3 503,780 - GFF1186 0.53 +2.7 503,810 - GFF1186 0.55 +2.2 503,873 + GFF1186 0.58 -2.0 503,944 - GFF1186 0.61 -3.2 504,001 + GFF1186 0.64 +1.3 504,286 + GFF1186 0.77 -0.8 504,286 + GFF1186 0.77 -0.1 504,287 - GFF1186 0.77 +3.1 504,287 - GFF1186 0.77 -1.3 504,287 - GFF1186 0.77 -1.2 504,287 - GFF1186 0.77 -0.4 504,287 - GFF1186 0.77 +0.8 504,287 - GFF1186 0.77 +3.7 504,287 - GFF1186 0.77 +3.5 504,362 - GFF1186 0.80 +0.2 504,457 + GFF1186 0.85 +0.8 504,457 + GFF1186 0.85 -0.6 504,457 + GFF1186 0.85 -0.3 504,457 + GFF1186 0.85 -0.8 504,457 + GFF1186 0.85 -0.8 504,457 + GFF1186 0.85 +1.6 504,458 - GFF1186 0.85 +0.9 504,467 - GFF1186 0.85 -0.6 504,481 + GFF1186 0.86 -2.3 504,481 + GFF1186 0.86 -2.7 504,481 + GFF1186 0.86 +0.4 504,481 + GFF1186 0.86 -0.0 504,482 - GFF1186 0.86 -1.4 504,482 - GFF1186 0.86 -0.8 504,482 - GFF1186 0.86 -1.9 504,482 - GFF1186 0.86 -1.6 504,482 - GFF1186 0.86 +0.4 504,774 + -0.3 504,774 + +0.8 504,774 + +0.6 504,975 + GFF1187 0.20 -2.1 505,035 + GFF1187 0.26 -1.8 505,037 + GFF1187 0.26 -1.7 505,038 - GFF1187 0.27 +1.5 505,038 - GFF1187 0.27 -1.8 505,038 - GFF1187 0.27 -2.1 505,038 - GFF1187 0.27 +0.6 505,056 + GFF1187 0.28 -2.5 505,056 + GFF1187 0.28 -3.4 505,056 + GFF1187 0.28 +0.2 505,057 - GFF1187 0.29 +0.3 505,057 - GFF1187 0.29 -0.3 505,057 - GFF1187 0.29 -1.7 505,057 - GFF1187 0.29 -1.2 505,057 - GFF1187 0.29 +2.0 505,057 - GFF1187 0.29 -1.1 505,057 - GFF1187 0.29 -1.9 505,057 - GFF1187 0.29 +1.0 505,096 - GFF1187 0.33 -1.6 505,096 - GFF1187 0.33 -0.1 505,197 + GFF1187 0.43 -2.7 505,240 - GFF1187 0.48 -1.8 505,392 + GFF1187 0.64 -1.8 505,392 + GFF1187 0.64 -1.4 505,393 - GFF1187 0.64 +0.3 505,602 + GFF1187 0.86 +0.7 505,602 + GFF1187 0.86 -2.2 505,603 - GFF1187 0.87 -1.8
Or see this region's nucleotide sequence