Strain Fitness in Variovorax sp. SCN45 around GFF1151

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1150 and GFF1151 overlap by 4 nucleotidesGFF1151 and GFF1152 are separated by 47 nucleotidesGFF1152 and GFF1153 are separated by 31 nucleotides GFF1150 - NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase, at 467,475 to 469,172 GFF1150 GFF1151 - Nitrogen regulatory protein P-II, at 469,169 to 469,507 GFF1151 GFF1152 - Lysine decarboxylase family, at 469,555 to 470,145 GFF1152 GFF1153 - Diacylglycerol kinase (EC 2.7.1.107), at 470,177 to 470,584 GFF1153 Position (kb) 469 470Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 468.339 kb on + strand, within GFF1150at 468.339 kb on + strand, within GFF1150at 468.340 kb on - strand, within GFF1150at 468.340 kb on - strand, within GFF1150at 468.340 kb on - strand, within GFF1150at 468.340 kb on - strand, within GFF1150at 468.340 kb on - strand, within GFF1150at 468.368 kb on + strand, within GFF1150at 468.472 kb on - strand, within GFF1150at 468.472 kb on - strand, within GFF1150at 468.472 kb on - strand, within GFF1150at 468.531 kb on + strand, within GFF1150at 468.726 kb on + strand, within GFF1150at 468.726 kb on + strand, within GFF1150at 468.738 kb on + strand, within GFF1150at 468.739 kb on - strand, within GFF1150at 468.739 kb on - strand, within GFF1150at 468.930 kb on + strand, within GFF1150at 468.931 kb on - strand, within GFF1150at 468.960 kb on + strand, within GFF1150at 468.960 kb on + strand, within GFF1150at 468.960 kb on + strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 468.961 kb on - strand, within GFF1150at 469.005 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.056 kb on + strandat 469.057 kb on - strandat 469.057 kb on - strandat 469.057 kb on - strandat 469.057 kb on - strandat 469.057 kb on - strandat 469.127 kb on + strandat 469.128 kb on - strandat 469.128 kb on - strandat 469.128 kb on - strandat 469.128 kb on - strandat 469.305 kb on - strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.319 kb on + strand, within GFF1151at 469.320 kb on - strand, within GFF1151at 469.320 kb on - strand, within GFF1151at 469.320 kb on - strand, within GFF1151at 469.320 kb on - strand, within GFF1151at 469.402 kb on + strand, within GFF1151at 469.402 kb on + strand, within GFF1151at 469.402 kb on + strand, within GFF1151at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.721 kb on + strand, within GFF1152at 469.722 kb on - strand, within GFF1152at 469.722 kb on - strand, within GFF1152at 469.724 kb on + strand, within GFF1152at 469.725 kb on - strand, within GFF1152at 469.725 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.025 kb on - strand, within GFF1152at 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.117 kb on + strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strandat 470.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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468,339 + GFF1150 0.51 -1.0
468,339 + GFF1150 0.51 -3.8
468,340 - GFF1150 0.51 -1.7
468,340 - GFF1150 0.51 -3.1
468,340 - GFF1150 0.51 +1.0
468,340 - GFF1150 0.51 +1.7
468,340 - GFF1150 0.51 -0.3
468,368 + GFF1150 0.53 +1.4
468,472 - GFF1150 0.59 -1.2
468,472 - GFF1150 0.59 +1.5
468,472 - GFF1150 0.59 +0.2
468,531 + GFF1150 0.62 +0.7
468,726 + GFF1150 0.74 -1.0
468,726 + GFF1150 0.74 +0.5
468,738 + GFF1150 0.74 -0.4
468,739 - GFF1150 0.74 +0.5
468,739 - GFF1150 0.74 +0.9
468,930 + GFF1150 0.86 -0.1
468,931 - GFF1150 0.86 +1.4
468,960 + GFF1150 0.87 -1.9
468,960 + GFF1150 0.87 -1.9
468,960 + GFF1150 0.87 +1.0
468,961 - GFF1150 0.88 +0.7
468,961 - GFF1150 0.88 -2.5
468,961 - GFF1150 0.88 +0.5
468,961 - GFF1150 0.88 +1.1
468,961 - GFF1150 0.88 -2.0
468,961 - GFF1150 0.88 -0.5
468,961 - GFF1150 0.88 -3.1
468,961 - GFF1150 0.88 -1.6
468,961 - GFF1150 0.88 -3.0
468,961 - GFF1150 0.88 -1.7
469,005 + +0.3
469,056 + +1.0
469,056 + -1.4
469,056 + -0.0
469,056 + +0.8
469,056 + -1.0
469,056 + +0.2
469,056 + -1.3
469,057 - -0.8
469,057 - -1.5
469,057 - -0.0
469,057 - +2.5
469,057 - -0.2
469,127 + -0.7
469,128 - -1.4
469,128 - -1.8
469,128 - +2.2
469,128 - -0.0
469,305 - GFF1151 0.40 -2.3
469,319 + GFF1151 0.44 +1.4
469,319 + GFF1151 0.44 +1.7
469,319 + GFF1151 0.44 +0.0
469,319 + GFF1151 0.44 -0.5
469,319 + GFF1151 0.44 -1.0
469,319 + GFF1151 0.44 -1.3
469,319 + GFF1151 0.44 -0.8
469,320 - GFF1151 0.45 -1.2
469,320 - GFF1151 0.45 -2.5
469,320 - GFF1151 0.45 -0.4
469,320 - GFF1151 0.45 +0.3
469,402 + GFF1151 0.69 -0.8
469,402 + GFF1151 0.69 -0.8
469,402 + GFF1151 0.69 -0.5
469,721 + GFF1152 0.28 -1.7
469,721 + GFF1152 0.28 +0.8
469,721 + GFF1152 0.28 +0.8
469,721 + GFF1152 0.28 -0.0
469,721 + GFF1152 0.28 -1.2
469,721 + GFF1152 0.28 -1.8
469,721 + GFF1152 0.28 -0.3
469,721 + GFF1152 0.28 +0.2
469,722 - GFF1152 0.28 +0.9
469,722 - GFF1152 0.28 -2.3
469,724 + GFF1152 0.29 -1.5
469,725 - GFF1152 0.29 -0.4
469,725 - GFF1152 0.29 -1.0
470,025 - GFF1152 0.80 -0.0
470,025 - GFF1152 0.80 -0.2
470,025 - GFF1152 0.80 -0.2
470,025 - GFF1152 0.80 -0.2
470,025 - GFF1152 0.80 +3.2
470,025 - GFF1152 0.80 +1.0
470,025 - GFF1152 0.80 +0.2
470,117 + +1.2
470,117 + +1.6
470,117 + +2.3
470,117 + +1.0
470,117 + +0.0
470,117 + -0.4
470,117 + -1.5
470,117 + -2.0
470,118 - +1.6
470,118 - -3.0
470,118 - -3.3
470,118 - -2.7
470,118 - +0.5
470,118 - -1.2
470,118 - -0.1

Or see this region's nucleotide sequence