Strain Fitness in Variovorax sp. SCN45 around GFF1095

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1093 and GFF1094 overlap by 4 nucleotidesGFF1094 and GFF1095 are separated by 17 nucleotidesGFF1095 and GFF1096 are separated by 16 nucleotidesGFF1096 and GFF1097 are separated by 28 nucleotides GFF1093 - Phosphate ABC transporter, permease protein PstC (TC 3.A.1.7.1), at 405,838 to 406,920 GFF1093 GFF1094 - Phosphate ABC transporter, permease protein PstA (TC 3.A.1.7.1), at 406,917 to 407,804 GFF1094 GFF1095 - Phosphate ABC transporter, ATP-binding protein PstB (TC 3.A.1.7.1), at 407,822 to 408,601 GFF1095 GFF1096 - Phosphate transport system regulatory protein PhoU, at 408,618 to 409,319 GFF1096 GFF1097 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 409,348 to 410,040 GFF1097 Position (kb) 407 408 409Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 406.822 kb on + strandat 406.822 kb on + strandat 406.823 kb on - strandat 406.849 kb on - strandat 406.849 kb on - strandat 406.849 kb on - strandat 407.080 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.238 kb on + strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.239 kb on - strand, within GFF1094at 407.250 kb on + strand, within GFF1094at 407.251 kb on - strand, within GFF1094at 407.251 kb on - strand, within GFF1094at 407.341 kb on - strand, within GFF1094at 407.358 kb on + strand, within GFF1094at 407.481 kb on + strand, within GFF1094at 407.481 kb on + strand, within GFF1094at 407.482 kb on - strand, within GFF1094at 407.482 kb on - strand, within GFF1094at 407.701 kb on - strand, within GFF1094at 407.768 kb on + strandat 407.769 kb on - strandat 407.769 kb on - strandat 407.802 kb on + strandat 407.802 kb on + strandat 407.882 kb on + strandat 407.882 kb on + strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.883 kb on - strandat 407.886 kb on - strandat 408.014 kb on + strand, within GFF1095at 408.434 kb on + strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.435 kb on - strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.457 kb on + strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.458 kb on - strand, within GFF1095at 408.489 kb on - strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.497 kb on + strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.498 kb on - strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.503 kb on + strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.504 kb on - strand, within GFF1095at 408.578 kb on + strandat 408.578 kb on + strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.579 kb on - strandat 408.726 kb on + strand, within GFF1096at 408.727 kb on - strand, within GFF1096at 408.727 kb on - strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on + strand, within GFF1096at 409.143 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.144 kb on - strand, within GFF1096at 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.254 kb on + strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.255 kb on - strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.300 kb on + strandat 409.301 kb on - strandat 409.301 kb on - strandat 409.317 kb on + strandat 409.318 kb on - strandat 409.318 kb on - strandat 409.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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406,822 + -0.5
406,822 + -0.1
406,823 - -0.2
406,849 - -1.4
406,849 - -0.4
406,849 - +0.2
407,080 + GFF1094 0.18 -1.7
407,238 + GFF1094 0.36 +0.8
407,238 + GFF1094 0.36 -1.4
407,238 + GFF1094 0.36 -0.3
407,238 + GFF1094 0.36 -2.4
407,238 + GFF1094 0.36 -0.8
407,238 + GFF1094 0.36 -1.8
407,239 - GFF1094 0.36 -1.4
407,239 - GFF1094 0.36 +0.2
407,239 - GFF1094 0.36 -1.0
407,250 + GFF1094 0.38 +0.6
407,251 - GFF1094 0.38 -0.4
407,251 - GFF1094 0.38 +0.4
407,341 - GFF1094 0.48 -0.6
407,358 + GFF1094 0.50 -1.0
407,481 + GFF1094 0.64 +0.3
407,481 + GFF1094 0.64 +0.2
407,482 - GFF1094 0.64 -3.4
407,482 - GFF1094 0.64 +1.3
407,701 - GFF1094 0.88 -0.7
407,768 + -1.0
407,769 - -0.9
407,769 - -0.7
407,802 + -1.9
407,802 + -2.1
407,882 + +1.2
407,882 + +1.1
407,883 - -2.3
407,883 - -0.0
407,883 - -1.0
407,886 - +0.2
408,014 + GFF1095 0.25 -1.3
408,434 + GFF1095 0.78 -0.2
408,435 - GFF1095 0.79 -2.9
408,435 - GFF1095 0.79 +1.6
408,457 + GFF1095 0.81 -1.6
408,457 + GFF1095 0.81 -0.5
408,457 + GFF1095 0.81 -2.2
408,458 - GFF1095 0.82 +0.9
408,458 - GFF1095 0.82 -1.6
408,458 - GFF1095 0.82 -1.1
408,489 - GFF1095 0.86 -0.5
408,497 + GFF1095 0.87 -2.3
408,497 + GFF1095 0.87 +1.8
408,497 + GFF1095 0.87 -2.5
408,497 + GFF1095 0.87 -1.9
408,498 - GFF1095 0.87 +2.5
408,498 - GFF1095 0.87 +2.1
408,498 - GFF1095 0.87 +3.4
408,498 - GFF1095 0.87 +1.2
408,498 - GFF1095 0.87 +0.0
408,498 - GFF1095 0.87 -2.8
408,498 - GFF1095 0.87 -0.5
408,498 - GFF1095 0.87 +0.4
408,503 + GFF1095 0.87 +0.2
408,503 + GFF1095 0.87 -0.6
408,504 - GFF1095 0.87 +2.3
408,504 - GFF1095 0.87 +2.7
408,578 + -0.9
408,578 + -1.3
408,579 - +1.8
408,579 - +0.6
408,579 - -2.6
408,579 - -1.2
408,579 - -1.7
408,726 + GFF1096 0.15 -1.6
408,727 - GFF1096 0.16 -2.4
408,727 - GFF1096 0.16 -3.2
409,143 + GFF1096 0.75 -0.2
409,143 + GFF1096 0.75 -1.0
409,143 + GFF1096 0.75 +2.9
409,143 + GFF1096 0.75 -0.4
409,143 + GFF1096 0.75 -2.6
409,143 + GFF1096 0.75 -1.8
409,143 + GFF1096 0.75 +0.5
409,143 + GFF1096 0.75 -2.6
409,143 + GFF1096 0.75 -0.8
409,143 + GFF1096 0.75 +1.8
409,143 + GFF1096 0.75 -3.0
409,143 + GFF1096 0.75 +1.8
409,143 - GFF1096 0.75 -1.8
409,144 - GFF1096 0.75 +0.6
409,144 - GFF1096 0.75 +0.2
409,144 - GFF1096 0.75 +0.7
409,144 - GFF1096 0.75 -0.6
409,144 - GFF1096 0.75 -0.1
409,144 - GFF1096 0.75 +0.1
409,144 - GFF1096 0.75 +1.1
409,144 - GFF1096 0.75 -1.6
409,144 - GFF1096 0.75 -0.5
409,144 - GFF1096 0.75 +2.3
409,144 - GFF1096 0.75 -1.8
409,144 - GFF1096 0.75 -0.2
409,144 - GFF1096 0.75 +1.2
409,144 - GFF1096 0.75 -1.0
409,254 + -1.2
409,254 + -2.4
409,254 + -0.6
409,254 + -3.5
409,254 + -0.2
409,254 + -3.2
409,254 + -0.5
409,254 + -2.6
409,254 + +2.1
409,254 + -1.6
409,254 + -0.2
409,254 + +0.5
409,254 + -1.0
409,254 + -0.5
409,254 + -1.0
409,255 - +0.2
409,255 - -1.0
409,255 - +1.5
409,255 - +1.7
409,255 - +0.8
409,255 - +0.8
409,300 + +0.5
409,300 + -0.9
409,300 + +2.3
409,300 + -1.5
409,301 - -0.8
409,301 - -2.4
409,317 + -0.6
409,318 - -0.5
409,318 - -0.4
409,318 - -1.5

Or see this region's nucleotide sequence