Strain Fitness in Variovorax sp. SCN45 around GFF1081

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1079 and GFF1080 are separated by 183 nucleotidesGFF1080 and GFF1081 are separated by 335 nucleotidesGFF1081 and GFF1082 are separated by 37 nucleotides GFF1079 - no description, at 390,091 to 390,342 GFF1079 GFF1080 - no description, at 390,526 to 390,789 GFF1080 GFF1081 - hypothetical protein, at 391,125 to 392,807 GFF1081 GFF1082 - no description, at 392,845 to 393,060 GFF1082 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 390.212 kb on + strand, within GFF1079at 390.212 kb on + strand, within GFF1079at 390.212 kb on + strand, within GFF1079at 390.213 kb on - strand, within GFF1079at 390.245 kb on + strand, within GFF1079at 390.245 kb on + strand, within GFF1079at 390.245 kb on + strand, within GFF1079at 390.245 kb on + strand, within GFF1079at 390.246 kb on - strand, within GFF1079at 390.246 kb on - strand, within GFF1079at 390.331 kb on - strandat 390.531 kb on + strandat 390.531 kb on + strandat 390.531 kb on + strandat 390.531 kb on + strandat 390.572 kb on + strand, within GFF1080at 390.573 kb on - strand, within GFF1080at 390.573 kb on - strand, within GFF1080at 390.573 kb on - strand, within GFF1080at 390.573 kb on - strand, within GFF1080at 390.606 kb on + strand, within GFF1080at 390.606 kb on + strand, within GFF1080at 390.607 kb on - strand, within GFF1080at 390.615 kb on + strand, within GFF1080at 390.615 kb on + strand, within GFF1080at 390.806 kb on + strandat 390.806 kb on + strandat 390.820 kb on - strandat 390.820 kb on - strandat 390.834 kb on - strandat 390.918 kb on + strandat 390.918 kb on + strandat 390.919 kb on - strandat 391.037 kb on - strandat 391.039 kb on + strandat 391.040 kb on - strandat 391.102 kb on - strandat 391.102 kb on - strandat 391.119 kb on + strandat 391.363 kb on - strand, within GFF1081at 391.363 kb on - strand, within GFF1081at 391.363 kb on - strand, within GFF1081at 391.363 kb on - strand, within GFF1081at 391.363 kb on - strand, within GFF1081at 391.389 kb on + strand, within GFF1081at 391.392 kb on + strand, within GFF1081at 391.392 kb on + strand, within GFF1081at 391.393 kb on - strand, within GFF1081at 391.393 kb on - strand, within GFF1081at 391.607 kb on + strand, within GFF1081at 391.713 kb on - strand, within GFF1081at 391.713 kb on - strand, within GFF1081at 391.713 kb on - strand, within GFF1081at 391.731 kb on + strand, within GFF1081at 391.731 kb on + strand, within GFF1081at 391.732 kb on - strand, within GFF1081at 391.732 kb on - strand, within GFF1081at 391.732 kb on - strand, within GFF1081at 391.861 kb on + strand, within GFF1081at 392.012 kb on + strand, within GFF1081at 392.012 kb on + strand, within GFF1081at 392.013 kb on - strand, within GFF1081at 392.013 kb on - strand, within GFF1081at 392.013 kb on - strand, within GFF1081at 392.013 kb on - strand, within GFF1081at 392.016 kb on + strand, within GFF1081at 392.016 kb on + strand, within GFF1081at 392.016 kb on + strand, within GFF1081at 392.017 kb on - strand, within GFF1081at 392.028 kb on + strand, within GFF1081at 392.061 kb on + strand, within GFF1081at 392.061 kb on + strand, within GFF1081at 392.061 kb on + strand, within GFF1081at 392.061 kb on + strand, within GFF1081at 392.062 kb on - strand, within GFF1081at 392.092 kb on + strand, within GFF1081at 392.092 kb on + strand, within GFF1081at 392.092 kb on + strand, within GFF1081at 392.092 kb on + strand, within GFF1081at 392.092 kb on + strand, within GFF1081at 392.093 kb on - strand, within GFF1081at 392.193 kb on + strand, within GFF1081at 392.194 kb on - strand, within GFF1081at 392.211 kb on + strand, within GFF1081at 392.212 kb on - strand, within GFF1081at 392.268 kb on + strand, within GFF1081at 392.269 kb on - strand, within GFF1081at 392.335 kb on + strand, within GFF1081at 392.335 kb on + strand, within GFF1081at 392.335 kb on + strand, within GFF1081at 392.335 kb on + strand, within GFF1081at 392.336 kb on - strand, within GFF1081at 392.510 kb on + strand, within GFF1081at 392.526 kb on + strand, within GFF1081at 392.526 kb on + strand, within GFF1081at 392.527 kb on - strand, within GFF1081at 392.527 kb on - strand, within GFF1081at 392.527 kb on - strand, within GFF1081at 392.527 kb on - strand, within GFF1081at 392.527 kb on - strand, within GFF1081at 392.544 kb on + strand, within GFF1081at 392.544 kb on + strand, within GFF1081at 392.602 kb on - strand, within GFF1081at 392.611 kb on - strand, within GFF1081at 392.742 kb on + strandat 392.761 kb on + strandat 392.775 kb on - strandat 392.788 kb on + strandat 392.822 kb on + strandat 392.822 kb on + strandat 392.823 kb on - strandat 392.829 kb on - strandat 392.829 kb on - strandat 392.832 kb on + strandat 392.833 kb on - strandat 393.045 kb on + strandat 393.045 kb on + strandat 393.051 kb on + strandat 393.087 kb on + strandat 393.087 kb on + strandat 393.087 kb on + strandat 393.088 kb on - strandat 393.088 kb on - strandat 393.088 kb on - strandat 393.088 kb on - strandat 393.088 kb on - strandat 393.088 kb on - strandat 393.088 kb on - strandat 393.088 kb on - strandat 393.088 kb on - strandat 393.134 kb on - strandat 393.172 kb on + strandat 393.172 kb on + strandat 393.172 kb on + strandat 393.172 kb on + strandat 393.173 kb on - strandat 393.173 kb on - strandat 393.173 kb on - strandat 393.173 kb on - strandat 393.173 kb on - strandat 393.173 kb on - strandat 393.173 kb on - strandat 393.173 kb on - strandat 393.176 kb on + strandat 393.648 kb on + strandat 393.648 kb on + strandat 393.671 kb on - strandat 393.700 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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390,212 + GFF1079 0.48 -1.7
390,212 + GFF1079 0.48 -1.2
390,212 + GFF1079 0.48 +0.4
390,213 - GFF1079 0.48 -0.3
390,245 + GFF1079 0.61 -0.2
390,245 + GFF1079 0.61 -2.0
390,245 + GFF1079 0.61 -1.7
390,245 + GFF1079 0.61 -2.1
390,246 - GFF1079 0.62 +0.3
390,246 - GFF1079 0.62 -1.0
390,331 - -1.6
390,531 + -0.3
390,531 + -1.8
390,531 + +0.8
390,531 + -0.2
390,572 + GFF1080 0.17 +0.7
390,573 - GFF1080 0.18 +2.8
390,573 - GFF1080 0.18 -1.7
390,573 - GFF1080 0.18 -0.2
390,573 - GFF1080 0.18 +1.2
390,606 + GFF1080 0.30 -0.4
390,606 + GFF1080 0.30 -1.7
390,607 - GFF1080 0.31 -1.1
390,615 + GFF1080 0.34 -0.2
390,615 + GFF1080 0.34 -2.5
390,806 + -2.9
390,806 + +0.3
390,820 - +0.6
390,820 - -0.8
390,834 - -2.2
390,918 + -0.1
390,918 + +0.8
390,919 - +1.5
391,037 - +0.6
391,039 + +0.8
391,040 - +0.2
391,102 - +0.6
391,102 - -0.7
391,119 + -1.0
391,363 - GFF1081 0.14 -0.5
391,363 - GFF1081 0.14 -1.5
391,363 - GFF1081 0.14 -0.7
391,363 - GFF1081 0.14 -0.2
391,363 - GFF1081 0.14 -1.6
391,389 + GFF1081 0.16 -1.0
391,392 + GFF1081 0.16 -0.5
391,392 + GFF1081 0.16 +0.8
391,393 - GFF1081 0.16 -0.1
391,393 - GFF1081 0.16 +0.3
391,607 + GFF1081 0.29 -0.2
391,713 - GFF1081 0.35 -0.5
391,713 - GFF1081 0.35 -0.4
391,713 - GFF1081 0.35 -1.7
391,731 + GFF1081 0.36 +3.0
391,731 + GFF1081 0.36 -0.2
391,732 - GFF1081 0.36 -2.8
391,732 - GFF1081 0.36 +1.1
391,732 - GFF1081 0.36 +2.2
391,861 + GFF1081 0.44 -0.9
392,012 + GFF1081 0.53 +2.1
392,012 + GFF1081 0.53 -0.3
392,013 - GFF1081 0.53 +1.6
392,013 - GFF1081 0.53 +0.3
392,013 - GFF1081 0.53 +0.3
392,013 - GFF1081 0.53 +0.3
392,016 + GFF1081 0.53 -2.4
392,016 + GFF1081 0.53 +1.0
392,016 + GFF1081 0.53 -3.6
392,017 - GFF1081 0.53 -0.2
392,028 + GFF1081 0.54 +0.0
392,061 + GFF1081 0.56 +1.6
392,061 + GFF1081 0.56 -0.2
392,061 + GFF1081 0.56 -1.2
392,061 + GFF1081 0.56 +1.7
392,062 - GFF1081 0.56 -0.5
392,092 + GFF1081 0.57 -1.1
392,092 + GFF1081 0.57 +0.3
392,092 + GFF1081 0.57 +0.7
392,092 + GFF1081 0.57 +0.8
392,092 + GFF1081 0.57 -0.8
392,093 - GFF1081 0.58 -1.7
392,193 + GFF1081 0.63 -1.8
392,194 - GFF1081 0.64 -1.2
392,211 + GFF1081 0.65 -2.2
392,212 - GFF1081 0.65 +0.1
392,268 + GFF1081 0.68 -1.5
392,269 - GFF1081 0.68 -0.1
392,335 + GFF1081 0.72 +0.3
392,335 + GFF1081 0.72 -2.1
392,335 + GFF1081 0.72 +1.1
392,335 + GFF1081 0.72 +2.8
392,336 - GFF1081 0.72 -3.5
392,510 + GFF1081 0.82 -0.0
392,526 + GFF1081 0.83 -1.3
392,526 + GFF1081 0.83 -1.5
392,527 - GFF1081 0.83 -1.1
392,527 - GFF1081 0.83 -2.1
392,527 - GFF1081 0.83 +0.8
392,527 - GFF1081 0.83 -1.2
392,527 - GFF1081 0.83 -1.5
392,544 + GFF1081 0.84 +0.7
392,544 + GFF1081 0.84 -0.4
392,602 - GFF1081 0.88 -0.7
392,611 - GFF1081 0.88 +1.8
392,742 + +0.9
392,761 + -1.1
392,775 - -2.7
392,788 + -1.7
392,822 + -2.6
392,822 + +1.3
392,823 - -0.4
392,829 - -1.2
392,829 - -0.8
392,832 + -0.8
392,833 - +0.4
393,045 + -0.8
393,045 + -0.2
393,051 + -0.4
393,087 + +0.2
393,087 + -1.9
393,087 + -0.7
393,088 - -1.6
393,088 - -1.8
393,088 - +0.7
393,088 - +0.0
393,088 - +1.0
393,088 - +0.3
393,088 - -1.3
393,088 - +0.2
393,088 - -0.6
393,134 - +0.8
393,172 + -1.7
393,172 + +0.1
393,172 + -1.6
393,172 + -1.5
393,173 - +0.2
393,173 - +1.5
393,173 - -2.4
393,173 - -2.3
393,173 - +0.8
393,173 - -0.1
393,173 - +0.2
393,173 - +0.3
393,176 + -0.5
393,648 + -0.4
393,648 + -1.9
393,671 - -0.1
393,700 - -2.3

Or see this region's nucleotide sequence