Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF843 and GFF844 are separated by 6 nucleotides GFF844 and GFF845 are separated by 90 nucleotides GFF845 and GFF846 overlap by 4 nucleotides
GFF843 - no description, at 152,121 to 153,215
GFF843
GFF844 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 153,222 to 154,661
GFF844
GFF845 - dTDP-glucose 4,6-dehydratase, at 154,752 to 155,495
GFF845
GFF846 - hypothetical protein, at 155,492 to 156,025
GFF846
Position (kb) 153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 152.382 kb on + strand, within GFF843 at 152.382 kb on + strand, within GFF843 at 152.383 kb on - strand, within GFF843 at 152.383 kb on - strand, within GFF843 at 152.581 kb on + strand, within GFF843 at 152.581 kb on + strand, within GFF843 at 152.843 kb on + strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 153.075 kb on + strand, within GFF843 at 153.112 kb on - strand at 153.514 kb on + strand, within GFF844 at 153.712 kb on + strand, within GFF844 at 153.713 kb on - strand, within GFF844 at 153.713 kb on - strand, within GFF844 at 153.713 kb on - strand, within GFF844 at 153.788 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.202 kb on - strand, within GFF844 at 154.438 kb on + strand, within GFF844 at 154.438 kb on + strand, within GFF844 at 154.462 kb on + strand, within GFF844 at 154.463 kb on - strand, within GFF844 at 154.579 kb on + strand at 154.580 kb on - strand at 154.715 kb on - strand at 154.715 kb on - strand at 154.765 kb on + strand at 154.765 kb on + strand at 154.830 kb on + strand, within GFF845 at 155.130 kb on + strand, within GFF845 at 155.131 kb on - strand, within GFF845 at 155.131 kb on - strand, within GFF845
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 152,382 + GFF843 0.24 -2.3 152,382 + GFF843 0.24 +0.0 152,383 - GFF843 0.24 -1.5 152,383 - GFF843 0.24 -0.4 152,581 + GFF843 0.42 +1.5 152,581 + GFF843 0.42 -1.4 152,843 + GFF843 0.66 +1.4 152,845 - GFF843 0.66 +0.5 152,845 - GFF843 0.66 -1.4 152,845 - GFF843 0.66 +1.9 152,845 - GFF843 0.66 +0.6 152,845 - GFF843 0.66 -1.1 153,075 + GFF843 0.87 -1.5 153,112 - +1.9 153,514 + GFF844 0.20 -0.5 153,712 + GFF844 0.34 -0.9 153,713 - GFF844 0.34 +1.9 153,713 - GFF844 0.34 -3.4 153,713 - GFF844 0.34 -2.9 153,788 - GFF844 0.39 +2.1 154,202 - GFF844 0.68 -3.1 154,202 - GFF844 0.68 -1.1 154,202 - GFF844 0.68 -2.0 154,202 - GFF844 0.68 -0.1 154,438 + GFF844 0.84 -3.0 154,438 + GFF844 0.84 -0.8 154,462 + GFF844 0.86 +0.4 154,463 - GFF844 0.86 -0.1 154,579 + -1.4 154,580 - -1.2 154,715 - -0.4 154,715 - -0.4 154,765 + -2.0 154,765 + +0.5 154,830 + GFF845 0.10 -1.0 155,130 + GFF845 0.51 -1.1 155,131 - GFF845 0.51 +0.0 155,131 - GFF845 0.51 -0.4
Or see this region's nucleotide sequence