Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF841 and GFF842 overlap by 4 nucleotides GFF842 and GFF843 are separated by 138 nucleotides
GFF841 - zinc finger, SWIM-type, at 147,094 to 148,800
GFF841
GFF842 - hypothetical protein, at 148,797 to 151,982
GFF842
GFF843 - no description, at 152,121 to 153,215
GFF843
Position (kb) 148
149
150
151
152 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 148.199 kb on + strand, within GFF841 at 148.199 kb on + strand, within GFF841 at 148.317 kb on - strand, within GFF841 at 148.317 kb on - strand, within GFF841 at 148.415 kb on + strand, within GFF841 at 148.415 kb on + strand, within GFF841 at 148.415 kb on + strand, within GFF841 at 148.416 kb on - strand, within GFF841 at 148.416 kb on - strand, within GFF841 at 148.416 kb on - strand, within GFF841 at 148.416 kb on - strand, within GFF841 at 148.592 kb on + strand, within GFF841 at 148.593 kb on - strand, within GFF841 at 148.788 kb on - strand at 148.927 kb on + strand at 148.927 kb on + strand at 148.927 kb on + strand at 148.927 kb on + strand at 148.928 kb on - strand at 149.092 kb on + strand at 149.093 kb on - strand at 149.203 kb on + strand, within GFF842 at 149.203 kb on + strand, within GFF842 at 149.203 kb on + strand, within GFF842 at 149.203 kb on + strand, within GFF842 at 149.204 kb on - strand, within GFF842 at 149.937 kb on + strand, within GFF842 at 150.268 kb on + strand, within GFF842 at 150.304 kb on + strand, within GFF842 at 150.305 kb on - strand, within GFF842 at 150.898 kb on + strand, within GFF842 at 150.919 kb on + strand, within GFF842 at 150.967 kb on + strand, within GFF842 at 151.084 kb on + strand, within GFF842 at 151.084 kb on + strand, within GFF842 at 151.514 kb on - strand, within GFF842 at 151.548 kb on + strand, within GFF842 at 151.549 kb on - strand, within GFF842 at 151.549 kb on - strand, within GFF842 at 151.590 kb on - strand, within GFF842 at 151.823 kb on - strand at 151.823 kb on - strand at 151.823 kb on - strand at 152.072 kb on - strand at 152.072 kb on - strand at 152.072 kb on - strand at 152.140 kb on + strand at 152.140 kb on + strand at 152.140 kb on + strand at 152.140 kb on + strand at 152.141 kb on - strand at 152.141 kb on - strand at 152.190 kb on + strand at 152.382 kb on + strand, within GFF843 at 152.382 kb on + strand, within GFF843 at 152.383 kb on - strand, within GFF843 at 152.383 kb on - strand, within GFF843 at 152.581 kb on + strand, within GFF843 at 152.581 kb on + strand, within GFF843 at 152.843 kb on + strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843 at 152.845 kb on - strand, within GFF843
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 148,199 + GFF841 0.65 +2.2 148,199 + GFF841 0.65 -0.5 148,317 - GFF841 0.72 -1.1 148,317 - GFF841 0.72 -1.9 148,415 + GFF841 0.77 -2.9 148,415 + GFF841 0.77 +0.5 148,415 + GFF841 0.77 +0.5 148,416 - GFF841 0.77 +0.9 148,416 - GFF841 0.77 +0.1 148,416 - GFF841 0.77 +3.0 148,416 - GFF841 0.77 +0.9 148,592 + GFF841 0.88 +1.4 148,593 - GFF841 0.88 +1.1 148,788 - +1.1 148,927 + +0.1 148,927 + -2.7 148,927 + -0.2 148,927 + +0.5 148,928 - +1.6 149,092 + +0.7 149,093 - -1.3 149,203 + GFF842 0.13 -0.0 149,203 + GFF842 0.13 +0.9 149,203 + GFF842 0.13 -1.8 149,203 + GFF842 0.13 -0.3 149,204 - GFF842 0.13 +0.9 149,937 + GFF842 0.36 +1.4 150,268 + GFF842 0.46 +0.4 150,304 + GFF842 0.47 -0.4 150,305 - GFF842 0.47 -1.1 150,898 + GFF842 0.66 -0.4 150,919 + GFF842 0.67 +0.4 150,967 + GFF842 0.68 -0.9 151,084 + GFF842 0.72 +0.5 151,084 + GFF842 0.72 -2.0 151,514 - GFF842 0.85 -2.1 151,548 + GFF842 0.86 +2.1 151,549 - GFF842 0.86 +0.1 151,549 - GFF842 0.86 -2.1 151,590 - GFF842 0.88 +1.3 151,823 - -1.5 151,823 - -0.8 151,823 - -2.4 152,072 - +0.4 152,072 - +0.9 152,072 - -2.7 152,140 + -0.2 152,140 + -0.8 152,140 + -3.0 152,140 + -2.3 152,141 - -1.5 152,141 - -1.8 152,190 + +1.7 152,382 + GFF843 0.24 -2.3 152,382 + GFF843 0.24 +0.0 152,383 - GFF843 0.24 -1.5 152,383 - GFF843 0.24 -0.4 152,581 + GFF843 0.42 +1.5 152,581 + GFF843 0.42 -1.4 152,843 + GFF843 0.66 +1.4 152,845 - GFF843 0.66 +0.5 152,845 - GFF843 0.66 -1.4 152,845 - GFF843 0.66 +1.9 152,845 - GFF843 0.66 +0.6 152,845 - GFF843 0.66 -1.1
Or see this region's nucleotide sequence