Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF770 and GFF771 overlap by 4 nucleotides GFF771 and GFF772 overlap by 11 nucleotides
GFF770 - Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196), at 38,687 to 40,849
GFF770
GFF771 - Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141), at 40,846 to 42,714
GFF771
GFF772 - 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) / Malto-oligosyltrehalose synthase (EC 5.4.99.15), at 42,704 to 47,881
GFF772
Position (kb) 40
41
42
43 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 39.926 kb on + strand, within GFF770 at 40.325 kb on + strand, within GFF770 at 40.326 kb on - strand, within GFF770 at 40.571 kb on + strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.572 kb on - strand, within GFF770 at 40.669 kb on + strand at 41.204 kb on - strand, within GFF771 at 41.204 kb on - strand, within GFF771 at 41.345 kb on - strand, within GFF771 at 41.458 kb on + strand, within GFF771 at 41.458 kb on + strand, within GFF771 at 41.458 kb on + strand, within GFF771 at 41.459 kb on - strand, within GFF771 at 41.459 kb on - strand, within GFF771 at 41.459 kb on - strand, within GFF771 at 41.459 kb on - strand, within GFF771 at 41.485 kb on + strand, within GFF771 at 41.486 kb on - strand, within GFF771 at 41.486 kb on - strand, within GFF771 at 41.497 kb on + strand, within GFF771 at 41.498 kb on - strand, within GFF771 at 41.591 kb on - strand, within GFF771 at 41.608 kb on + strand, within GFF771 at 41.609 kb on - strand, within GFF771 at 41.885 kb on - strand, within GFF771 at 41.887 kb on + strand, within GFF771 at 41.950 kb on + strand, within GFF771 at 42.200 kb on - strand, within GFF771 at 42.469 kb on + strand, within GFF771 at 42.470 kb on - strand, within GFF771 at 43.218 kb on - strand at 43.424 kb on + strand, within GFF772 at 43.460 kb on + strand, within GFF772 at 43.461 kb on - strand, within GFF772 at 43.577 kb on + strand, within GFF772 at 43.578 kb on - strand, within GFF772
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 39,926 + GFF770 0.57 -1.6 40,325 + GFF770 0.76 +2.5 40,326 - GFF770 0.76 -2.6 40,571 + GFF770 0.87 -0.3 40,572 - GFF770 0.87 -0.1 40,572 - GFF770 0.87 -0.9 40,572 - GFF770 0.87 -0.6 40,572 - GFF770 0.87 -1.4 40,572 - GFF770 0.87 +0.5 40,572 - GFF770 0.87 -1.1 40,572 - GFF770 0.87 -0.5 40,669 + -1.5 41,204 - GFF771 0.19 -0.7 41,204 - GFF771 0.19 -0.1 41,345 - GFF771 0.27 +0.4 41,458 + GFF771 0.33 +0.4 41,458 + GFF771 0.33 +0.1 41,458 + GFF771 0.33 -0.6 41,459 - GFF771 0.33 -0.1 41,459 - GFF771 0.33 +0.2 41,459 - GFF771 0.33 +1.4 41,459 - GFF771 0.33 -1.1 41,485 + GFF771 0.34 -1.1 41,486 - GFF771 0.34 -0.6 41,486 - GFF771 0.34 +0.4 41,497 + GFF771 0.35 -0.4 41,498 - GFF771 0.35 -2.6 41,591 - GFF771 0.40 -1.8 41,608 + GFF771 0.41 +1.0 41,609 - GFF771 0.41 +0.0 41,885 - GFF771 0.56 -0.6 41,887 + GFF771 0.56 +2.2 41,950 + GFF771 0.59 +1.1 42,200 - GFF771 0.72 -2.6 42,469 + GFF771 0.87 +0.9 42,470 - GFF771 0.87 -0.9 43,218 - -0.4 43,424 + GFF772 0.14 -2.0 43,460 + GFF772 0.15 +1.0 43,461 - GFF772 0.15 -0.1 43,577 + GFF772 0.17 -5.0 43,578 - GFF772 0.17 -0.6
Or see this region's nucleotide sequence