Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7371 and GFF7372 are separated by 1 nucleotides GFF7372 and GFF7373 are separated by 72 nucleotides GFF7373 and GFF7374 are separated by 16 nucleotides
GFF7371 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 734 to 1,546
GFF7371
GFF7372 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5), at 1,548 to 2,186
GFF7372
GFF7373 - CaiB/BaiF family protein, at 2,259 to 3,650
GFF7373
GFF7374 - FIG00984748: hypothetical protein, at 3,667 to 4,743
GFF7374
Position (kb) 2
3
4 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 1.361 kb on + strand, within GFF7371 at 1.361 kb on + strand, within GFF7371 at 1.361 kb on + strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.362 kb on - strand, within GFF7371 at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.609 kb on - strand at 1.609 kb on - strand at 1.609 kb on - strand at 1.609 kb on - strand at 1.634 kb on + strand, within GFF7372 at 1.634 kb on + strand, within GFF7372 at 1.634 kb on + strand, within GFF7372 at 1.635 kb on - strand, within GFF7372 at 1.635 kb on - strand, within GFF7372 at 2.184 kb on + strand at 2.185 kb on - strand at 2.524 kb on + strand, within GFF7373 at 2.525 kb on - strand, within GFF7373 at 3.097 kb on + strand, within GFF7373 at 3.097 kb on + strand, within GFF7373 at 3.097 kb on + strand, within GFF7373 at 3.097 kb on + strand, within GFF7373 at 3.097 kb on + strand, within GFF7373 at 3.097 kb on + strand, within GFF7373 at 3.098 kb on - strand, within GFF7373 at 3.098 kb on - strand, within GFF7373 at 3.098 kb on - strand, within GFF7373 at 3.098 kb on - strand, within GFF7373 at 3.098 kb on - strand, within GFF7373 at 3.098 kb on - strand, within GFF7373 at 3.098 kb on - strand, within GFF7373 at 3.098 kb on - strand, within GFF7373 at 3.348 kb on + strand, within GFF7373 at 3.348 kb on + strand, within GFF7373 at 3.417 kb on - strand, within GFF7373 at 3.508 kb on - strand, within GFF7373 at 3.558 kb on - strand at 3.558 kb on - strand at 3.558 kb on - strand at 3.673 kb on + strand at 4.009 kb on + strand, within GFF7374 at 4.111 kb on + strand, within GFF7374 at 4.111 kb on + strand, within GFF7374 at 4.111 kb on + strand, within GFF7374 at 4.111 kb on + strand, within GFF7374 at 4.111 kb on + strand, within GFF7374 at 4.112 kb on - strand, within GFF7374 at 4.112 kb on - strand, within GFF7374 at 4.112 kb on - strand, within GFF7374 at 4.114 kb on + strand, within GFF7374 at 4.114 kb on + strand, within GFF7374 at 4.114 kb on + strand, within GFF7374 at 4.114 kb on + strand, within GFF7374 at 4.114 kb on + strand, within GFF7374 at 4.115 kb on - strand, within GFF7374 at 4.115 kb on - strand, within GFF7374 at 4.115 kb on - strand, within GFF7374 at 4.115 kb on - strand, within GFF7374 at 4.231 kb on + strand, within GFF7374 at 4.231 kb on + strand, within GFF7374 at 4.231 kb on + strand, within GFF7374 at 4.345 kb on + strand, within GFF7374 at 4.345 kb on + strand, within GFF7374 at 4.345 kb on + strand, within GFF7374 at 4.346 kb on - strand, within GFF7374 at 4.346 kb on - strand, within GFF7374 at 4.346 kb on - strand, within GFF7374 at 4.346 kb on - strand, within GFF7374 at 4.582 kb on + strand, within GFF7374 at 4.582 kb on + strand, within GFF7374 at 4.582 kb on + strand, within GFF7374 at 4.582 kb on + strand, within GFF7374 at 4.583 kb on - strand, within GFF7374 at 4.583 kb on - strand, within GFF7374 at 4.583 kb on - strand, within GFF7374 at 4.583 kb on - strand, within GFF7374 at 4.583 kb on - strand, within GFF7374 at 4.583 kb on - strand, within GFF7374 at 4.583 kb on - strand, within GFF7374 at 4.583 kb on - strand, within GFF7374 at 4.607 kb on - strand, within GFF7374 at 4.615 kb on + strand, within GFF7374 at 4.616 kb on - strand, within GFF7374
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 1,361 + GFF7371 0.77 +0.6 1,361 + GFF7371 0.77 +0.3 1,361 + GFF7371 0.77 +0.2 1,362 - GFF7371 0.77 +0.1 1,362 - GFF7371 0.77 +6.9 1,362 - GFF7371 0.77 +3.0 1,362 - GFF7371 0.77 -0.2 1,362 - GFF7371 0.77 +1.8 1,362 - GFF7371 0.77 -0.5 1,362 - GFF7371 0.77 -1.1 1,362 - GFF7371 0.77 +2.2 1,608 + +0.5 1,608 + +2.0 1,608 + -2.0 1,608 + +0.5 1,608 + +3.0 1,608 + +0.5 1,608 + -0.1 1,608 + -0.1 1,609 - +2.3 1,609 - +1.6 1,609 - +2.9 1,609 - +0.6 1,634 + GFF7372 0.13 -0.2 1,634 + GFF7372 0.13 +2.2 1,634 + GFF7372 0.13 -1.2 1,635 - GFF7372 0.14 -1.4 1,635 - GFF7372 0.14 +0.0 2,184 + +2.0 2,185 - +1.4 2,524 + GFF7373 0.19 +1.4 2,525 - GFF7373 0.19 +3.2 3,097 + GFF7373 0.60 +0.6 3,097 + GFF7373 0.60 +0.9 3,097 + GFF7373 0.60 +3.4 3,097 + GFF7373 0.60 +0.6 3,097 + GFF7373 0.60 +0.6 3,097 + GFF7373 0.60 -0.2 3,098 - GFF7373 0.60 +0.6 3,098 - GFF7373 0.60 +1.2 3,098 - GFF7373 0.60 +0.6 3,098 - GFF7373 0.60 +1.1 3,098 - GFF7373 0.60 -1.5 3,098 - GFF7373 0.60 +1.0 3,098 - GFF7373 0.60 +1.0 3,098 - GFF7373 0.60 +1.1 3,348 + GFF7373 0.78 -1.5 3,348 + GFF7373 0.78 +0.2 3,417 - GFF7373 0.83 +0.4 3,508 - GFF7373 0.90 +2.0 3,558 - +1.7 3,558 - +0.4 3,558 - -1.5 3,673 + +2.8 4,009 + GFF7374 0.32 -1.1 4,111 + GFF7374 0.41 +2.9 4,111 + GFF7374 0.41 +0.4 4,111 + GFF7374 0.41 +2.2 4,111 + GFF7374 0.41 +1.4 4,111 + GFF7374 0.41 +1.2 4,112 - GFF7374 0.41 +1.4 4,112 - GFF7374 0.41 +2.3 4,112 - GFF7374 0.41 -1.3 4,114 + GFF7374 0.42 -0.5 4,114 + GFF7374 0.42 +0.7 4,114 + GFF7374 0.42 +0.4 4,114 + GFF7374 0.42 +1.2 4,114 + GFF7374 0.42 -1.6 4,115 - GFF7374 0.42 -0.1 4,115 - GFF7374 0.42 +2.0 4,115 - GFF7374 0.42 -0.8 4,115 - GFF7374 0.42 +0.0 4,231 + GFF7374 0.52 +0.7 4,231 + GFF7374 0.52 -0.5 4,231 + GFF7374 0.52 +0.9 4,345 + GFF7374 0.63 +0.0 4,345 + GFF7374 0.63 +1.6 4,345 + GFF7374 0.63 +1.5 4,346 - GFF7374 0.63 +2.2 4,346 - GFF7374 0.63 +1.6 4,346 - GFF7374 0.63 +0.6 4,346 - GFF7374 0.63 +1.3 4,582 + GFF7374 0.85 +0.4 4,582 + GFF7374 0.85 +0.6 4,582 + GFF7374 0.85 +1.6 4,582 + GFF7374 0.85 +1.7 4,583 - GFF7374 0.85 +2.0 4,583 - GFF7374 0.85 +1.2 4,583 - GFF7374 0.85 +1.4 4,583 - GFF7374 0.85 -3.1 4,583 - GFF7374 0.85 -0.7 4,583 - GFF7374 0.85 +4.2 4,583 - GFF7374 0.85 -0.4 4,583 - GFF7374 0.85 -0.2 4,607 - GFF7374 0.87 +1.3 4,615 + GFF7374 0.88 +3.6 4,616 - GFF7374 0.88 +0.2
Or see this region's nucleotide sequence