Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7364 and GFF7365 are separated by 26 nucleotides GFF7365 and GFF7366 are separated by 1 nucleotides GFF7366 and GFF7367 are separated by 425 nucleotides GFF7367 and GFF7368 overlap by 37 nucleotides GFF7368 and GFF7369 are separated by 63 nucleotides
GFF7364 - no description, at 11,406 to 12,509
GFF7364
GFF7365 - no description, at 12,536 to 13,021
GFF7365
GFF7366 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 13,023 to 14,591
GFF7366
GFF7367 - Enoyl-CoA hydratase (EC 4.2.1.17), at 15,017 to 15,208
GFF7367
GFF7368 - Enoyl-CoA hydratase (EC 4.2.1.17), at 15,172 to 15,474
GFF7368
GFF7369 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 15,538 to 16,722
GFF7369
Position (kb) 13
14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 12.169 kb on + strand, within GFF7364 at 12.264 kb on + strand, within GFF7364 at 12.265 kb on - strand, within GFF7364 at 12.367 kb on + strand, within GFF7364 at 12.368 kb on - strand, within GFF7364 at 12.599 kb on + strand, within GFF7365 at 12.599 kb on + strand, within GFF7365 at 12.600 kb on - strand, within GFF7365 at 12.600 kb on - strand, within GFF7365 at 12.772 kb on - strand, within GFF7365 at 12.879 kb on + strand, within GFF7365 at 12.879 kb on + strand, within GFF7365 at 12.879 kb on + strand, within GFF7365 at 12.880 kb on - strand, within GFF7365 at 13.363 kb on + strand, within GFF7366 at 13.388 kb on - strand, within GFF7366 at 13.477 kb on + strand, within GFF7366 at 13.477 kb on + strand, within GFF7366 at 13.477 kb on + strand, within GFF7366 at 13.478 kb on - strand, within GFF7366 at 13.478 kb on - strand, within GFF7366 at 13.481 kb on - strand, within GFF7366 at 13.481 kb on - strand, within GFF7366 at 13.690 kb on + strand, within GFF7366 at 13.690 kb on + strand, within GFF7366 at 13.690 kb on + strand, within GFF7366 at 13.690 kb on + strand, within GFF7366 at 13.691 kb on - strand, within GFF7366 at 13.691 kb on - strand, within GFF7366 at 13.691 kb on - strand, within GFF7366 at 13.692 kb on + strand, within GFF7366 at 13.692 kb on + strand, within GFF7366 at 13.692 kb on + strand, within GFF7366 at 13.692 kb on + strand, within GFF7366 at 13.693 kb on - strand, within GFF7366 at 13.693 kb on - strand, within GFF7366 at 13.769 kb on - strand, within GFF7366 at 13.996 kb on + strand, within GFF7366 at 13.996 kb on + strand, within GFF7366 at 13.997 kb on - strand, within GFF7366 at 14.093 kb on + strand, within GFF7366 at 14.108 kb on - strand, within GFF7366 at 14.182 kb on + strand, within GFF7366 at 14.335 kb on + strand, within GFF7366 at 14.335 kb on + strand, within GFF7366 at 14.524 kb on + strand at 14.524 kb on + strand at 14.524 kb on + strand at 14.524 kb on + strand at 14.525 kb on - strand at 14.883 kb on - strand at 14.883 kb on - strand at 14.890 kb on - strand at 15.152 kb on + strand, within GFF7367 at 15.152 kb on + strand, within GFF7367 at 15.152 kb on + strand, within GFF7367 at 15.152 kb on + strand, within GFF7367 at 15.153 kb on - strand, within GFF7367 at 15.153 kb on - strand, within GFF7367 at 15.153 kb on - strand, within GFF7367 at 15.153 kb on - strand, within GFF7367 at 15.364 kb on + strand, within GFF7368 at 15.533 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 12,169 + GFF7364 0.69 -0.3 12,264 + GFF7364 0.78 +0.8 12,265 - GFF7364 0.78 +0.1 12,367 + GFF7364 0.87 +0.4 12,368 - GFF7364 0.87 -2.3 12,599 + GFF7365 0.13 +2.0 12,599 + GFF7365 0.13 -0.2 12,600 - GFF7365 0.13 -1.7 12,600 - GFF7365 0.13 +0.3 12,772 - GFF7365 0.49 +0.2 12,879 + GFF7365 0.71 +0.5 12,879 + GFF7365 0.71 -0.4 12,879 + GFF7365 0.71 -1.5 12,880 - GFF7365 0.71 -0.7 13,363 + GFF7366 0.22 -1.4 13,388 - GFF7366 0.23 -2.4 13,477 + GFF7366 0.29 -0.8 13,477 + GFF7366 0.29 -1.8 13,477 + GFF7366 0.29 +1.1 13,478 - GFF7366 0.29 -2.6 13,478 - GFF7366 0.29 -1.7 13,481 - GFF7366 0.29 +0.1 13,481 - GFF7366 0.29 -2.3 13,690 + GFF7366 0.43 -0.6 13,690 + GFF7366 0.43 -1.4 13,690 + GFF7366 0.43 -0.1 13,690 + GFF7366 0.43 -2.1 13,691 - GFF7366 0.43 +0.4 13,691 - GFF7366 0.43 +1.6 13,691 - GFF7366 0.43 -3.0 13,692 + GFF7366 0.43 -1.8 13,692 + GFF7366 0.43 -0.8 13,692 + GFF7366 0.43 -1.8 13,692 + GFF7366 0.43 -1.9 13,693 - GFF7366 0.43 +0.6 13,693 - GFF7366 0.43 -2.9 13,769 - GFF7366 0.48 -1.4 13,996 + GFF7366 0.62 -1.2 13,996 + GFF7366 0.62 -1.4 13,997 - GFF7366 0.62 +0.0 14,093 + GFF7366 0.68 -0.6 14,108 - GFF7366 0.69 +0.2 14,182 + GFF7366 0.74 +1.8 14,335 + GFF7366 0.84 +1.4 14,335 + GFF7366 0.84 -0.6 14,524 + +0.1 14,524 + -1.7 14,524 + -0.6 14,524 + -2.0 14,525 - -1.3 14,883 - +1.8 14,883 - +0.1 14,890 - -0.8 15,152 + GFF7367 0.70 -2.6 15,152 + GFF7367 0.70 +1.8 15,152 + GFF7367 0.70 +1.1 15,152 + GFF7367 0.70 +1.2 15,153 - GFF7367 0.71 +2.0 15,153 - GFF7367 0.71 -2.8 15,153 - GFF7367 0.71 +2.0 15,153 - GFF7367 0.71 +2.2 15,364 + GFF7368 0.63 +0.0 15,533 + -1.9
Or see this region's nucleotide sequence