Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7355 and GFF7356 are separated by 182 nucleotides GFF7356 and GFF7357 overlap by 4 nucleotides GFF7357 and GFF7358 overlap by 17 nucleotides GFF7358 and GFF7359 overlap by 8 nucleotides
GFF7355 - 1,2-phenylacetyl-CoA epoxidase, subunit A (EC 1.14.13.149), at 3,254 to 4,243
GFF7355
GFF7356 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 4,426 to 5,151
GFF7356
GFF7357 - Phenylacetate ABC transporter, ATP-binding protein 1, at 5,148 to 5,912
GFF7357
GFF7358 - Phenylacetate ABC transporter, permease protein 2, at 5,896 to 6,864
GFF7358
GFF7359 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 6,857 to 7,729
GFF7359
Position (kb) 5
6 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.239 kb on + strand at 4.239 kb on + strand at 4.239 kb on + strand at 4.240 kb on - strand at 4.240 kb on - strand at 4.439 kb on + strand at 4.440 kb on - strand at 4.517 kb on + strand, within GFF7356 at 4.518 kb on - strand, within GFF7356 at 4.518 kb on - strand, within GFF7356 at 4.779 kb on - strand, within GFF7356 at 5.074 kb on + strand, within GFF7356 at 5.102 kb on + strand at 5.167 kb on + strand at 5.167 kb on + strand at 5.168 kb on - strand at 5.449 kb on + strand, within GFF7357 at 5.450 kb on - strand, within GFF7357 at 5.753 kb on - strand, within GFF7357 at 6.014 kb on + strand, within GFF7358 at 6.014 kb on + strand, within GFF7358 at 6.015 kb on - strand, within GFF7358 at 6.015 kb on - strand, within GFF7358 at 6.203 kb on + strand, within GFF7358 at 6.204 kb on - strand, within GFF7358 at 6.204 kb on - strand, within GFF7358 at 6.518 kb on + strand, within GFF7358 at 6.519 kb on - strand, within GFF7358 at 6.644 kb on + strand, within GFF7358 at 6.695 kb on + strand, within GFF7358 at 6.712 kb on - strand, within GFF7358 at 6.734 kb on + strand, within GFF7358 at 6.735 kb on - strand, within GFF7358 at 6.742 kb on + strand, within GFF7358 at 6.742 kb on + strand, within GFF7358 at 6.743 kb on - strand, within GFF7358
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 4,239 + +1.1 4,239 + -0.5 4,239 + -2.1 4,240 - -0.2 4,240 - +0.1 4,439 + +1.0 4,440 - -3.3 4,517 + GFF7356 0.13 +0.3 4,518 - GFF7356 0.13 -0.8 4,518 - GFF7356 0.13 -0.2 4,779 - GFF7356 0.49 +0.8 5,074 + GFF7356 0.89 -2.4 5,102 + -1.8 5,167 + +0.9 5,167 + -0.8 5,168 - -0.9 5,449 + GFF7357 0.39 -2.4 5,450 - GFF7357 0.39 -0.8 5,753 - GFF7357 0.79 -2.7 6,014 + GFF7358 0.12 -1.1 6,014 + GFF7358 0.12 -1.6 6,015 - GFF7358 0.12 +2.9 6,015 - GFF7358 0.12 -1.2 6,203 + GFF7358 0.32 -1.4 6,204 - GFF7358 0.32 +1.0 6,204 - GFF7358 0.32 -0.1 6,518 + GFF7358 0.64 +0.8 6,519 - GFF7358 0.64 +0.1 6,644 + GFF7358 0.77 -0.1 6,695 + GFF7358 0.82 -1.2 6,712 - GFF7358 0.84 -1.2 6,734 + GFF7358 0.86 -2.3 6,735 - GFF7358 0.87 -1.2 6,742 + GFF7358 0.87 -1.0 6,742 + GFF7358 0.87 +0.3 6,743 - GFF7358 0.87 +0.4
Or see this region's nucleotide sequence