Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7317 and GFF7318 overlap by 4 nucleotides GFF7318 and GFF7319 are separated by 184 nucleotides GFF7319 and GFF7320 are separated by 85 nucleotides
GFF7317 - RND efflux system, inner membrane transporter, at 9,642 to 12,794
GFF7317
GFF7318 - RND efflux system, membrane fusion protein, at 12,791 to 14,047
GFF7318
GFF7319 - hypothetical protein, at 14,232 to 14,690
GFF7319
GFF7320 - tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3), at 14,776 to 16,122
GFF7320
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 12.262 kb on + strand, within GFF7317 at 12.262 kb on + strand, within GFF7317 at 12.262 kb on + strand, within GFF7317 at 12.263 kb on - strand, within GFF7317 at 12.409 kb on + strand, within GFF7317 at 12.410 kb on - strand, within GFF7317 at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.676 kb on + strand at 12.677 kb on - strand at 12.677 kb on - strand at 12.677 kb on - strand at 12.677 kb on - strand at 12.677 kb on - strand at 12.709 kb on + strand at 12.709 kb on + strand at 12.710 kb on - strand at 12.710 kb on - strand at 12.710 kb on - strand at 12.710 kb on - strand at 12.710 kb on - strand at 13.004 kb on + strand, within GFF7318 at 13.004 kb on + strand, within GFF7318 at 13.004 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.074 kb on + strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.075 kb on - strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.141 kb on + strand, within GFF7318 at 13.440 kb on + strand, within GFF7318 at 13.440 kb on + strand, within GFF7318 at 13.441 kb on - strand, within GFF7318 at 13.441 kb on - strand, within GFF7318 at 13.441 kb on - strand, within GFF7318 at 13.491 kb on + strand, within GFF7318 at 13.491 kb on + strand, within GFF7318 at 13.492 kb on - strand, within GFF7318 at 13.632 kb on + strand, within GFF7318 at 13.632 kb on + strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 13.633 kb on - strand, within GFF7318 at 14.004 kb on - strand at 14.080 kb on + strand at 14.081 kb on - strand at 14.130 kb on + strand at 14.130 kb on + strand at 14.130 kb on + strand at 14.130 kb on + strand at 14.131 kb on - strand at 14.198 kb on - strand at 14.225 kb on - strand at 14.264 kb on + strand at 14.265 kb on - strand at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.538 kb on + strand, within GFF7319 at 14.539 kb on - strand, within GFF7319 at 14.539 kb on - strand, within GFF7319 at 14.539 kb on - strand, within GFF7319 at 14.550 kb on + strand, within GFF7319 at 14.550 kb on + strand, within GFF7319 at 14.550 kb on + strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.551 kb on - strand, within GFF7319 at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.688 kb on + strand at 14.689 kb on - strand at 14.689 kb on - strand at 14.786 kb on + strand at 14.786 kb on + strand at 14.787 kb on - strand at 14.787 kb on - strand at 14.787 kb on - strand at 14.787 kb on - strand at 14.821 kb on + strand at 14.821 kb on + strand at 14.866 kb on + strand at 14.866 kb on + strand at 14.866 kb on + strand at 14.866 kb on + strand at 14.867 kb on - strand at 14.867 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 12,262 + GFF7317 0.83 -2.4 12,262 + GFF7317 0.83 -1.1 12,262 + GFF7317 0.83 +0.6 12,263 - GFF7317 0.83 -0.4 12,409 + GFF7317 0.88 -3.5 12,410 - GFF7317 0.88 +1.2 12,676 + +0.3 12,676 + -1.6 12,676 + -0.4 12,676 + +0.9 12,676 + -1.6 12,676 + +2.7 12,676 + -0.4 12,677 - +0.2 12,677 - -1.2 12,677 - -0.6 12,677 - -1.9 12,677 - -1.6 12,709 + +0.5 12,709 + -1.4 12,710 - -0.4 12,710 - +1.4 12,710 - -3.8 12,710 - +0.2 12,710 - -1.1 13,004 + GFF7318 0.17 -1.1 13,004 + GFF7318 0.17 -0.4 13,004 + GFF7318 0.17 +0.2 13,074 + GFF7318 0.23 -0.3 13,074 + GFF7318 0.23 -0.1 13,074 + GFF7318 0.23 -0.6 13,074 + GFF7318 0.23 +1.1 13,074 + GFF7318 0.23 -1.4 13,074 + GFF7318 0.23 +0.9 13,074 + GFF7318 0.23 -0.1 13,074 + GFF7318 0.23 +0.4 13,074 + GFF7318 0.23 -0.5 13,074 + GFF7318 0.23 -2.2 13,075 - GFF7318 0.23 -1.1 13,075 - GFF7318 0.23 +0.6 13,075 - GFF7318 0.23 -0.6 13,075 - GFF7318 0.23 -3.5 13,075 - GFF7318 0.23 -2.2 13,075 - GFF7318 0.23 -1.2 13,075 - GFF7318 0.23 -0.4 13,075 - GFF7318 0.23 -0.0 13,075 - GFF7318 0.23 -0.1 13,075 - GFF7318 0.23 -0.8 13,141 + GFF7318 0.28 -1.1 13,141 + GFF7318 0.28 -0.1 13,141 + GFF7318 0.28 +0.1 13,141 + GFF7318 0.28 -1.1 13,141 + GFF7318 0.28 -2.8 13,440 + GFF7318 0.52 -1.2 13,440 + GFF7318 0.52 -3.8 13,441 - GFF7318 0.52 -0.2 13,441 - GFF7318 0.52 -0.8 13,441 - GFF7318 0.52 -1.1 13,491 + GFF7318 0.56 -0.8 13,491 + GFF7318 0.56 -2.2 13,492 - GFF7318 0.56 -0.1 13,632 + GFF7318 0.67 -2.1 13,632 + GFF7318 0.67 +0.6 13,633 - GFF7318 0.67 +1.0 13,633 - GFF7318 0.67 -2.0 13,633 - GFF7318 0.67 -0.3 13,633 - GFF7318 0.67 +0.9 13,633 - GFF7318 0.67 +0.3 13,633 - GFF7318 0.67 +0.2 13,633 - GFF7318 0.67 -0.2 13,633 - GFF7318 0.67 -2.5 13,633 - GFF7318 0.67 -0.4 13,633 - GFF7318 0.67 +2.2 14,004 - +1.4 14,080 + -1.9 14,081 - -0.4 14,130 + -0.2 14,130 + +1.7 14,130 + +0.7 14,130 + -0.2 14,131 - +1.8 14,198 - -1.7 14,225 - +0.8 14,264 + +0.4 14,265 - -1.2 14,538 + GFF7319 0.67 -2.2 14,538 + GFF7319 0.67 -0.9 14,538 + GFF7319 0.67 +2.2 14,538 + GFF7319 0.67 -1.5 14,538 + GFF7319 0.67 -1.8 14,538 + GFF7319 0.67 -0.4 14,539 - GFF7319 0.67 -2.5 14,539 - GFF7319 0.67 -2.5 14,539 - GFF7319 0.67 +0.3 14,550 + GFF7319 0.69 +2.5 14,550 + GFF7319 0.69 +0.3 14,550 + GFF7319 0.69 +0.9 14,551 - GFF7319 0.69 -1.3 14,551 - GFF7319 0.69 +0.3 14,551 - GFF7319 0.69 -3.1 14,551 - GFF7319 0.69 +0.1 14,551 - GFF7319 0.69 -0.9 14,551 - GFF7319 0.69 -0.9 14,551 - GFF7319 0.69 +0.9 14,688 + -0.6 14,688 + +0.2 14,688 + +1.4 14,688 + +1.3 14,688 + -1.1 14,688 + -1.1 14,688 + -3.4 14,689 - -0.4 14,689 - -1.6 14,786 + -3.5 14,786 + +0.6 14,787 - -2.0 14,787 - -1.6 14,787 - -1.5 14,787 - +1.3 14,821 + +0.0 14,821 + -0.3 14,866 + -2.5 14,866 + +1.0 14,866 + -1.9 14,866 + -1.1 14,867 - +1.3 14,867 - +1.2
Or see this region's nucleotide sequence