Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7298 and GFF7299 are separated by 18 nucleotides GFF7299 and GFF7300 are separated by 31 nucleotides GFF7300 and GFF7301 are separated by 124 nucleotides
GFF7298 - 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8), at 16,403 to 17,251
GFF7298
GFF7299 - MotA/TolQ/ExbB proton channel family protein, at 17,270 to 17,965
GFF7299
GFF7300 - Biopolymer transport protein ExbD/TolR, at 17,997 to 18,467
GFF7300
GFF7301 - Glycogen phosphorylase (EC 2.4.1.1), at 18,592 to 21,075
GFF7301
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 17.705 kb on + strand, within GFF7299 at 17.705 kb on + strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.706 kb on - strand, within GFF7299 at 17.834 kb on + strand, within GFF7299 at 17.834 kb on + strand, within GFF7299 at 17.834 kb on + strand, within GFF7299 at 17.834 kb on + strand, within GFF7299 at 17.834 kb on + strand, within GFF7299 at 17.834 kb on + strand, within GFF7299 at 17.835 kb on - strand, within GFF7299 at 17.835 kb on - strand, within GFF7299 at 17.835 kb on - strand, within GFF7299 at 17.835 kb on - strand, within GFF7299 at 17.835 kb on - strand, within GFF7299 at 17.835 kb on - strand, within GFF7299 at 17.835 kb on - strand, within GFF7299 at 18.367 kb on - strand, within GFF7300 at 18.598 kb on + strand at 18.598 kb on + strand at 18.598 kb on + strand at 18.599 kb on - strand at 18.599 kb on - strand at 18.599 kb on - strand at 18.604 kb on + strand at 18.604 kb on + strand at 18.604 kb on + strand at 18.604 kb on + strand at 18.605 kb on - strand at 18.605 kb on - strand at 18.605 kb on - strand at 18.605 kb on - strand at 18.605 kb on - strand at 18.605 kb on - strand at 18.615 kb on + strand at 18.616 kb on - strand at 18.616 kb on - strand at 18.616 kb on - strand at 18.616 kb on - strand at 18.636 kb on - strand at 18.722 kb on + strand at 18.755 kb on + strand at 18.755 kb on + strand at 18.755 kb on + strand at 18.755 kb on + strand at 18.756 kb on - strand at 18.756 kb on - strand at 18.756 kb on - strand at 18.756 kb on - strand at 18.764 kb on + strand at 18.765 kb on - strand at 18.765 kb on - strand at 18.782 kb on + strand at 18.782 kb on + strand at 18.782 kb on + strand at 18.782 kb on + strand at 18.783 kb on - strand at 18.783 kb on - strand at 18.783 kb on - strand at 18.783 kb on - strand at 18.783 kb on - strand at 18.783 kb on - strand at 18.812 kb on + strand at 18.812 kb on + strand at 18.812 kb on + strand at 18.813 kb on - strand at 18.824 kb on + strand at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.902 kb on + strand, within GFF7301 at 18.903 kb on - strand, within GFF7301 at 18.903 kb on - strand, within GFF7301 at 18.903 kb on - strand, within GFF7301 at 18.903 kb on - strand, within GFF7301 at 18.903 kb on - strand, within GFF7301 at 18.903 kb on - strand, within GFF7301 at 18.920 kb on + strand, within GFF7301 at 19.154 kb on + strand, within GFF7301 at 19.154 kb on + strand, within GFF7301 at 19.155 kb on - strand, within GFF7301 at 19.155 kb on - strand, within GFF7301 at 19.155 kb on - strand, within GFF7301 at 19.155 kb on - strand, within GFF7301 at 19.155 kb on - strand, within GFF7301 at 19.155 kb on - strand, within GFF7301 at 19.259 kb on + strand, within GFF7301 at 19.259 kb on + strand, within GFF7301 at 19.259 kb on + strand, within GFF7301 at 19.259 kb on + strand, within GFF7301 at 19.259 kb on + strand, within GFF7301 at 19.259 kb on + strand, within GFF7301 at 19.260 kb on - strand, within GFF7301 at 19.260 kb on - strand, within GFF7301 at 19.260 kb on - strand, within GFF7301 at 19.260 kb on - strand, within GFF7301 at 19.260 kb on - strand, within GFF7301 at 19.260 kb on - strand, within GFF7301 at 19.391 kb on + strand, within GFF7301 at 19.391 kb on + strand, within GFF7301 at 19.391 kb on + strand, within GFF7301 at 19.392 kb on - strand, within GFF7301 at 19.392 kb on - strand, within GFF7301 at 19.392 kb on - strand, within GFF7301 at 19.392 kb on - strand, within GFF7301 at 19.392 kb on - strand, within GFF7301 at 19.392 kb on - strand, within GFF7301
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 17,705 + GFF7299 0.62 -0.3 17,705 + GFF7299 0.62 +1.6 17,706 - GFF7299 0.63 +0.3 17,706 - GFF7299 0.63 -2.0 17,706 - GFF7299 0.63 +1.7 17,706 - GFF7299 0.63 +1.7 17,706 - GFF7299 0.63 +0.7 17,706 - GFF7299 0.63 +0.6 17,706 - GFF7299 0.63 +0.4 17,706 - GFF7299 0.63 -0.6 17,706 - GFF7299 0.63 +1.7 17,706 - GFF7299 0.63 +0.0 17,834 + GFF7299 0.81 -2.7 17,834 + GFF7299 0.81 +4.2 17,834 + GFF7299 0.81 +0.4 17,834 + GFF7299 0.81 -2.5 17,834 + GFF7299 0.81 +0.3 17,834 + GFF7299 0.81 -0.8 17,835 - GFF7299 0.81 +0.3 17,835 - GFF7299 0.81 +0.5 17,835 - GFF7299 0.81 -1.5 17,835 - GFF7299 0.81 +0.3 17,835 - GFF7299 0.81 -2.5 17,835 - GFF7299 0.81 -0.5 17,835 - GFF7299 0.81 -1.0 18,367 - GFF7300 0.79 -1.5 18,598 + -2.0 18,598 + +0.0 18,598 + -1.5 18,599 - -1.8 18,599 - -0.6 18,599 - +1.1 18,604 + -1.4 18,604 + -0.5 18,604 + +0.8 18,604 + +2.9 18,605 - -1.4 18,605 - +0.4 18,605 - -1.5 18,605 - -1.2 18,605 - +1.9 18,605 - +0.2 18,615 + +0.4 18,616 - +1.0 18,616 - -0.6 18,616 - -1.0 18,616 - -0.0 18,636 - +0.1 18,722 + +0.0 18,755 + -1.5 18,755 + -0.3 18,755 + -0.3 18,755 + -1.1 18,756 - -0.4 18,756 - -0.3 18,756 - +1.1 18,756 - +0.6 18,764 + -0.4 18,765 - +0.6 18,765 - +0.5 18,782 + +0.5 18,782 + +2.6 18,782 + -2.1 18,782 + +0.6 18,783 - -1.5 18,783 - +0.6 18,783 - -0.9 18,783 - -0.4 18,783 - -0.6 18,783 - +1.6 18,812 + -0.7 18,812 + +0.6 18,812 + +0.5 18,813 - -1.8 18,824 + +0.5 18,902 + GFF7301 0.12 +1.7 18,902 + GFF7301 0.12 +0.2 18,902 + GFF7301 0.12 -1.0 18,902 + GFF7301 0.12 -1.9 18,902 + GFF7301 0.12 +0.1 18,902 + GFF7301 0.12 +0.6 18,902 + GFF7301 0.12 -1.6 18,902 + GFF7301 0.12 +1.0 18,902 + GFF7301 0.12 -0.2 18,902 + GFF7301 0.12 +0.5 18,902 + GFF7301 0.12 +1.5 18,902 + GFF7301 0.12 -1.0 18,902 + GFF7301 0.12 +0.7 18,902 + GFF7301 0.12 +0.4 18,902 + GFF7301 0.12 +0.0 18,902 + GFF7301 0.12 +0.3 18,903 - GFF7301 0.13 -0.6 18,903 - GFF7301 0.13 -0.9 18,903 - GFF7301 0.13 +0.0 18,903 - GFF7301 0.13 +0.1 18,903 - GFF7301 0.13 -1.6 18,903 - GFF7301 0.13 -0.2 18,920 + GFF7301 0.13 +1.2 19,154 + GFF7301 0.23 +0.0 19,154 + GFF7301 0.23 +1.0 19,155 - GFF7301 0.23 +1.0 19,155 - GFF7301 0.23 -1.0 19,155 - GFF7301 0.23 -1.1 19,155 - GFF7301 0.23 -0.0 19,155 - GFF7301 0.23 +0.3 19,155 - GFF7301 0.23 -2.3 19,259 + GFF7301 0.27 -0.1 19,259 + GFF7301 0.27 -1.6 19,259 + GFF7301 0.27 +1.9 19,259 + GFF7301 0.27 +0.3 19,259 + GFF7301 0.27 -0.2 19,259 + GFF7301 0.27 -0.9 19,260 - GFF7301 0.27 +1.4 19,260 - GFF7301 0.27 -1.2 19,260 - GFF7301 0.27 +0.8 19,260 - GFF7301 0.27 -1.0 19,260 - GFF7301 0.27 +0.7 19,260 - GFF7301 0.27 +1.0 19,391 + GFF7301 0.32 -1.7 19,391 + GFF7301 0.32 -0.5 19,391 + GFF7301 0.32 -0.1 19,392 - GFF7301 0.32 +0.1 19,392 - GFF7301 0.32 +1.5 19,392 - GFF7301 0.32 +1.7 19,392 - GFF7301 0.32 -2.8 19,392 - GFF7301 0.32 +2.2 19,392 - GFF7301 0.32 -0.6
Or see this region's nucleotide sequence