Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7286 and GFF7287 overlap by 4 nucleotides GFF7287 and GFF7288 are separated by 36 nucleotides
GFF7286 - Dipeptide ABC transporter, ATP-binding protein DppD (TC 3.A.1.5.2), at 4,003 to 5,031
GFF7286
GFF7287 - Dipeptide ABC transporter, ATP-binding protein DppF (TC 3.A.1.5.2), at 5,028 to 6,062
GFF7287
GFF7288 - Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2), at 6,099 to 7,730
GFF7288
Position (kb) 5
6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.684 kb on + strand, within GFF7286 at 4.685 kb on - strand, within GFF7286 at 4.685 kb on - strand, within GFF7286 at 4.747 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.876 kb on + strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 4.877 kb on - strand, within GFF7286 at 5.082 kb on + strand at 5.082 kb on + strand at 5.082 kb on + strand at 5.082 kb on + strand at 5.083 kb on - strand at 5.083 kb on - strand at 5.282 kb on + strand, within GFF7287 at 5.283 kb on - strand, within GFF7287 at 5.478 kb on + strand, within GFF7287 at 5.661 kb on + strand, within GFF7287 at 5.724 kb on + strand, within GFF7287 at 5.724 kb on + strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.725 kb on - strand, within GFF7287 at 5.787 kb on + strand, within GFF7287 at 5.787 kb on + strand, within GFF7287 at 5.979 kb on + strand at 5.979 kb on + strand at 6.060 kb on + strand at 6.061 kb on - strand at 6.213 kb on + strand at 6.214 kb on - strand at 6.244 kb on - strand at 6.294 kb on + strand, within GFF7288 at 6.294 kb on + strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.295 kb on - strand, within GFF7288 at 6.384 kb on + strand, within GFF7288 at 6.384 kb on + strand, within GFF7288 at 6.384 kb on + strand, within GFF7288 at 6.384 kb on + strand, within GFF7288 at 6.385 kb on - strand, within GFF7288 at 6.540 kb on + strand, within GFF7288 at 6.540 kb on + strand, within GFF7288 at 6.541 kb on - strand, within GFF7288 at 6.541 kb on - strand, within GFF7288 at 6.597 kb on + strand, within GFF7288 at 6.598 kb on - strand, within GFF7288 at 6.660 kb on + strand, within GFF7288 at 6.681 kb on + strand, within GFF7288 at 6.684 kb on + strand, within GFF7288 at 6.756 kb on + strand, within GFF7288 at 6.756 kb on + strand, within GFF7288 at 6.810 kb on + strand, within GFF7288 at 6.996 kb on + strand, within GFF7288 at 6.996 kb on + strand, within GFF7288 at 6.997 kb on - strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.005 kb on + strand, within GFF7288 at 7.006 kb on - strand, within GFF7288 at 7.006 kb on - strand, within GFF7288 at 7.006 kb on - strand, within GFF7288
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 4,684 + GFF7286 0.66 +0.0 4,684 + GFF7286 0.66 +1.1 4,684 + GFF7286 0.66 +1.1 4,684 + GFF7286 0.66 +0.0 4,684 + GFF7286 0.66 -0.4 4,684 + GFF7286 0.66 +0.2 4,685 - GFF7286 0.66 -0.9 4,685 - GFF7286 0.66 -0.0 4,747 + GFF7286 0.72 -1.6 4,876 + GFF7286 0.85 -2.4 4,876 + GFF7286 0.85 +0.5 4,876 + GFF7286 0.85 +2.3 4,877 - GFF7286 0.85 +2.6 4,877 - GFF7286 0.85 +0.8 4,877 - GFF7286 0.85 +0.9 5,082 + +0.6 5,082 + +1.0 5,082 + +1.6 5,082 + -0.4 5,083 - -1.3 5,083 - -1.3 5,282 + GFF7287 0.25 -2.5 5,283 - GFF7287 0.25 -1.1 5,478 + GFF7287 0.43 -3.8 5,661 + GFF7287 0.61 -2.1 5,724 + GFF7287 0.67 +2.0 5,724 + GFF7287 0.67 -0.6 5,725 - GFF7287 0.67 -0.4 5,725 - GFF7287 0.67 -0.3 5,725 - GFF7287 0.67 +1.7 5,725 - GFF7287 0.67 +1.2 5,787 + GFF7287 0.73 -1.4 5,787 + GFF7287 0.73 -2.5 5,979 + -0.9 5,979 + +2.6 6,060 + +0.9 6,061 - +0.3 6,213 + -0.7 6,214 - +1.3 6,244 - -2.5 6,294 + GFF7288 0.12 +1.4 6,294 + GFF7288 0.12 +4.3 6,295 - GFF7288 0.12 +1.9 6,295 - GFF7288 0.12 +0.7 6,295 - GFF7288 0.12 -0.7 6,295 - GFF7288 0.12 -0.1 6,295 - GFF7288 0.12 +1.4 6,384 + GFF7288 0.17 -0.2 6,384 + GFF7288 0.17 -1.1 6,384 + GFF7288 0.17 -0.4 6,384 + GFF7288 0.17 -1.0 6,385 - GFF7288 0.18 +0.5 6,540 + GFF7288 0.27 -1.6 6,540 + GFF7288 0.27 -1.1 6,541 - GFF7288 0.27 -0.6 6,541 - GFF7288 0.27 +0.7 6,597 + GFF7288 0.31 +0.4 6,598 - GFF7288 0.31 +1.4 6,660 + GFF7288 0.34 -1.5 6,681 + GFF7288 0.36 +0.1 6,684 + GFF7288 0.36 -0.7 6,756 + GFF7288 0.40 -0.1 6,756 + GFF7288 0.40 -0.2 6,810 + GFF7288 0.44 +0.2 6,996 + GFF7288 0.55 -0.5 6,996 + GFF7288 0.55 -0.4 6,997 - GFF7288 0.55 -0.6 7,005 + GFF7288 0.56 +0.9 7,005 + GFF7288 0.56 -0.6 7,005 + GFF7288 0.56 -1.6 7,005 + GFF7288 0.56 +0.6 7,006 - GFF7288 0.56 -1.6 7,006 - GFF7288 0.56 -1.7 7,006 - GFF7288 0.56 +0.0
Or see this region's nucleotide sequence