Strain Fitness in Variovorax sp. SCN45 around GFF7283

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF7282 and GFF7283 are separated by 99 nucleotidesGFF7283 and GFF7284 are separated by 51 nucleotides GFF7282 - NAD(P) transhydrogenase subunit beta (EC 1.6.1.2), at 1 to 126 GFF7282 GFF7283 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 226 to 1,905 GFF7283 GFF7284 - Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2), at 1,957 to 2,961 GFF7284 Position (kb) 0 1 2Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 0.052 kb on + strand, within GFF7282at 0.052 kb on + strand, within GFF7282at 0.052 kb on + strand, within GFF7282at 0.052 kb on + strand, within GFF7282at 0.052 kb on + strand, within GFF7282at 0.088 kb on - strand, within GFF7282at 0.105 kb on + strand, within GFF7282at 0.106 kb on - strand, within GFF7282at 0.124 kb on + strandat 0.124 kb on + strandat 0.124 kb on + strandat 0.124 kb on + strandat 0.124 kb on + strandat 0.125 kb on - strandat 0.125 kb on - strandat 0.125 kb on - strandat 0.254 kb on - strandat 0.276 kb on + strandat 0.276 kb on + strandat 0.277 kb on - strandat 0.334 kb on + strandat 0.334 kb on + strandat 0.334 kb on + strandat 0.335 kb on - strandat 0.335 kb on - strandat 0.352 kb on + strandat 0.352 kb on + strandat 0.353 kb on - strandat 0.353 kb on - strandat 0.353 kb on - strandat 0.419 kb on - strand, within GFF7283at 0.419 kb on - strand, within GFF7283at 0.547 kb on + strand, within GFF7283at 0.547 kb on + strand, within GFF7283at 0.548 kb on - strand, within GFF7283at 0.721 kb on + strand, within GFF7283at 0.721 kb on + strand, within GFF7283at 0.721 kb on + strand, within GFF7283at 0.721 kb on + strand, within GFF7283at 0.721 kb on + strand, within GFF7283at 0.721 kb on + strand, within GFF7283at 0.721 kb on + strand, within GFF7283at 0.722 kb on - strand, within GFF7283at 0.722 kb on - strand, within GFF7283at 0.722 kb on - strand, within GFF7283at 0.722 kb on - strand, within GFF7283at 0.862 kb on + strand, within GFF7283at 0.862 kb on + strand, within GFF7283at 0.862 kb on + strand, within GFF7283at 0.862 kb on + strand, within GFF7283at 0.862 kb on + strand, within GFF7283at 0.862 kb on + strand, within GFF7283at 0.862 kb on + strand, within GFF7283at 0.863 kb on - strand, within GFF7283at 0.863 kb on - strand, within GFF7283at 1.015 kb on + strand, within GFF7283at 1.015 kb on + strand, within GFF7283at 1.015 kb on + strand, within GFF7283at 1.016 kb on - strand, within GFF7283at 1.016 kb on - strand, within GFF7283at 1.307 kb on - strand, within GFF7283at 1.363 kb on + strand, within GFF7283at 1.636 kb on + strand, within GFF7283at 1.637 kb on - strand, within GFF7283at 1.787 kb on - strandat 1.787 kb on - strandat 1.803 kb on - strandat 1.803 kb on - strandat 1.810 kb on + strandat 1.810 kb on + strandat 1.810 kb on + strandat 1.811 kb on - strandat 1.811 kb on - strandat 1.811 kb on - strandat 1.811 kb on - strandat 1.829 kb on + strandat 1.903 kb on + strandat 1.904 kb on - strandat 1.920 kb on + strandat 1.944 kb on + strandat 1.944 kb on + strandat 1.944 kb on + strandat 1.944 kb on + strandat 1.945 kb on - strandat 2.017 kb on - strandat 2.122 kb on + strand, within GFF7284at 2.152 kb on + strand, within GFF7284at 2.161 kb on + strand, within GFF7284at 2.161 kb on + strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.162 kb on - strand, within GFF7284at 2.473 kb on + strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.474 kb on - strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.476 kb on + strand, within GFF7284at 2.477 kb on - strand, within GFF7284at 2.477 kb on - strand, within GFF7284at 2.477 kb on - strand, within GFF7284at 2.564 kb on + strand, within GFF7284at 2.564 kb on + strand, within GFF7284at 2.565 kb on - strand, within GFF7284at 2.653 kb on + strand, within GFF7284at 2.653 kb on + strand, within GFF7284at 2.653 kb on + strand, within GFF7284at 2.653 kb on + strand, within GFF7284at 2.654 kb on - strand, within GFF7284at 2.654 kb on - strand, within GFF7284at 2.654 kb on - strand, within GFF7284at 2.854 kb on + strand, within GFF7284

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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52 + GFF7282 0.40 -3.7
52 + GFF7282 0.40 -3.8
52 + GFF7282 0.40 +1.0
52 + GFF7282 0.40 +0.0
52 + GFF7282 0.40 +0.6
88 - GFF7282 0.69 -2.8
105 + GFF7282 0.83 +0.2
106 - GFF7282 0.83 -1.3
124 + +0.9
124 + -0.5
124 + -0.8
124 + +0.3
124 + +0.1
125 - -1.0
125 - -1.8
125 - +2.7
254 - -0.2
276 + -3.1
276 + -1.6
277 - -1.2
334 + -0.6
334 + -0.6
334 + +0.7
335 - -1.1
335 - -3.0
352 + +1.8
352 + +1.6
353 - +0.2
353 - -0.6
353 - -2.1
419 - GFF7283 0.11 -1.9
419 - GFF7283 0.11 +1.9
547 + GFF7283 0.19 -0.4
547 + GFF7283 0.19 +0.4
548 - GFF7283 0.19 +1.0
721 + GFF7283 0.29 +0.2
721 + GFF7283 0.29 +0.8
721 + GFF7283 0.29 +2.6
721 + GFF7283 0.29 -1.1
721 + GFF7283 0.29 -1.1
721 + GFF7283 0.29 +0.6
721 + GFF7283 0.29 +1.0
722 - GFF7283 0.30 +0.7
722 - GFF7283 0.30 +0.4
722 - GFF7283 0.30 +0.8
722 - GFF7283 0.30 -2.6
862 + GFF7283 0.38 +1.4
862 + GFF7283 0.38 -0.2
862 + GFF7283 0.38 -1.9
862 + GFF7283 0.38 -0.6
862 + GFF7283 0.38 -0.2
862 + GFF7283 0.38 +0.4
862 + GFF7283 0.38 -0.4
863 - GFF7283 0.38 +0.4
863 - GFF7283 0.38 -2.6
1,015 + GFF7283 0.47 +0.1
1,015 + GFF7283 0.47 +0.8
1,015 + GFF7283 0.47 -0.9
1,016 - GFF7283 0.47 +2.6
1,016 - GFF7283 0.47 -0.4
1,307 - GFF7283 0.64 +0.8
1,363 + GFF7283 0.68 +1.0
1,636 + GFF7283 0.84 -1.7
1,637 - GFF7283 0.84 +0.9
1,787 - +0.1
1,787 - +0.0
1,803 - -0.4
1,803 - +1.2
1,810 + -0.6
1,810 + +2.6
1,810 + -1.1
1,811 - +2.3
1,811 - -2.9
1,811 - +0.6
1,811 - -0.3
1,829 + -1.3
1,903 + -0.1
1,904 - +1.2
1,920 + -0.4
1,944 + +0.8
1,944 + -1.4
1,944 + -1.2
1,944 + +0.0
1,945 - -1.4
2,017 - -0.9
2,122 + GFF7284 0.16 +2.1
2,152 + GFF7284 0.19 -0.9
2,161 + GFF7284 0.20 +0.9
2,161 + GFF7284 0.20 -1.9
2,162 - GFF7284 0.20 -1.0
2,162 - GFF7284 0.20 -2.0
2,162 - GFF7284 0.20 -1.9
2,162 - GFF7284 0.20 -1.3
2,162 - GFF7284 0.20 -0.8
2,162 - GFF7284 0.20 -0.9
2,473 + GFF7284 0.51 +0.9
2,474 - GFF7284 0.51 -0.2
2,474 - GFF7284 0.51 +0.3
2,474 - GFF7284 0.51 +1.0
2,474 - GFF7284 0.51 +1.1
2,474 - GFF7284 0.51 -0.2
2,476 + GFF7284 0.52 +0.1
2,476 + GFF7284 0.52 -1.6
2,476 + GFF7284 0.52 -1.2
2,476 + GFF7284 0.52 -1.6
2,476 + GFF7284 0.52 -0.0
2,476 + GFF7284 0.52 +0.0
2,476 + GFF7284 0.52 -2.6
2,476 + GFF7284 0.52 -0.5
2,476 + GFF7284 0.52 +0.3
2,476 + GFF7284 0.52 +1.1
2,477 - GFF7284 0.52 -0.1
2,477 - GFF7284 0.52 -0.4
2,477 - GFF7284 0.52 +1.3
2,564 + GFF7284 0.60 +1.0
2,564 + GFF7284 0.60 +1.3
2,565 - GFF7284 0.60 -0.9
2,653 + GFF7284 0.69 -0.4
2,653 + GFF7284 0.69 +1.3
2,653 + GFF7284 0.69 +1.2
2,653 + GFF7284 0.69 -0.7
2,654 - GFF7284 0.69 -1.6
2,654 - GFF7284 0.69 -1.8
2,654 - GFF7284 0.69 -1.3
2,854 + GFF7284 0.89 -0.2

Or see this region's nucleotide sequence