Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7257 and GFF7258 are separated by 171 nucleotides GFF7258 and GFF7259 are separated by 183 nucleotides
GFF7257 - KEGG: LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor, at 3,805 to 4,782
GFF7257
GFF7258 - Transcriptional regulator, IclR family, at 4,954 to 6,501
GFF7258
GFF7259 - no description, at 6,685 to 7,509
GFF7259
Position (kb) 4
5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4.013 kb on - strand, within GFF7257 at 4.311 kb on + strand, within GFF7257 at 4.595 kb on - strand, within GFF7257 at 4.886 kb on - strand at 5.051 kb on + strand at 5.051 kb on + strand at 5.053 kb on + strand at 5.670 kb on - strand, within GFF7258 at 6.052 kb on + strand, within GFF7258 at 6.219 kb on - strand, within GFF7258 at 6.293 kb on + strand, within GFF7258 at 6.335 kb on + strand, within GFF7258 at 6.336 kb on - strand, within GFF7258 at 6.398 kb on + strand at 6.408 kb on + strand at 6.568 kb on - strand at 6.568 kb on - strand at 6.591 kb on + strand at 6.592 kb on - strand at 6.823 kb on + strand, within GFF7259 at 6.823 kb on + strand, within GFF7259 at 6.824 kb on - strand, within GFF7259 at 7.125 kb on + strand, within GFF7259 at 7.207 kb on + strand, within GFF7259 at 7.207 kb on + strand, within GFF7259 at 7.208 kb on - strand, within GFF7259 at 7.208 kb on - strand, within GFF7259 at 7.261 kb on + strand, within GFF7259
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 4,013 - GFF7257 0.21 +0.5 4,311 + GFF7257 0.52 +2.0 4,595 - GFF7257 0.81 +1.0 4,886 - -1.0 5,051 + +1.2 5,051 + +0.4 5,053 + -1.1 5,670 - GFF7258 0.46 -0.8 6,052 + GFF7258 0.71 -0.5 6,219 - GFF7258 0.82 -1.0 6,293 + GFF7258 0.86 -1.8 6,335 + GFF7258 0.89 -1.7 6,336 - GFF7258 0.89 +0.5 6,398 + +0.2 6,408 + +0.2 6,568 - -1.9 6,568 - -2.8 6,591 + +0.2 6,592 - -1.2 6,823 + GFF7259 0.17 +0.8 6,823 + GFF7259 0.17 -0.3 6,824 - GFF7259 0.17 +0.0 7,125 + GFF7259 0.53 -1.2 7,207 + GFF7259 0.63 +1.2 7,207 + GFF7259 0.63 +1.0 7,208 - GFF7259 0.63 -2.5 7,208 - GFF7259 0.63 -0.3 7,261 + GFF7259 0.70 -0.3
Or see this region's nucleotide sequence