Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7244 and GFF7245 are separated by 196 nucleotides GFF7245 and GFF7246 are separated by 1 nucleotides GFF7246 and GFF7247 are separated by 11 nucleotides GFF7247 and GFF7248 are separated by 38 nucleotides GFF7248 and GFF7249 overlap by 4 nucleotides
GFF7244 - no description, at 25,237 to 25,764
GFF7244
GFF7245 - universal stress protein, UspA family, at 25,961 to 26,383
GFF7245
GFF7246 - HtrA protease/chaperone protein, at 26,385 to 27,824
GFF7246
GFF7247 - no description, at 27,836 to 28,369
GFF7247
GFF7248 - no description, at 28,408 to 28,563
GFF7248
GFF7249 - no description, at 28,560 to 28,865
GFF7249
Position (kb) 26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 25.734 kb on - strand at 25.740 kb on - strand at 25.994 kb on + strand at 26.126 kb on + strand, within GFF7245 at 26.126 kb on + strand, within GFF7245 at 26.682 kb on + strand, within GFF7246 at 26.682 kb on + strand, within GFF7246 at 26.682 kb on + strand, within GFF7246 at 26.946 kb on + strand, within GFF7246 at 26.946 kb on + strand, within GFF7246 at 26.946 kb on + strand, within GFF7246 at 26.947 kb on - strand, within GFF7246 at 26.947 kb on - strand, within GFF7246 at 26.947 kb on - strand, within GFF7246 at 26.947 kb on - strand, within GFF7246 at 27.066 kb on + strand, within GFF7246 at 27.067 kb on - strand, within GFF7246 at 27.253 kb on + strand, within GFF7246 at 27.253 kb on + strand, within GFF7246 at 27.254 kb on - strand, within GFF7246 at 27.343 kb on - strand, within GFF7246 at 27.343 kb on - strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.570 kb on + strand, within GFF7246 at 27.571 kb on - strand, within GFF7246 at 27.571 kb on - strand, within GFF7246 at 27.604 kb on + strand, within GFF7246 at 27.744 kb on + strand at 27.744 kb on + strand at 27.745 kb on - strand at 27.745 kb on - strand at 27.748 kb on + strand at 27.748 kb on + strand at 27.749 kb on - strand at 27.749 kb on - strand at 27.816 kb on - strand at 27.927 kb on + strand, within GFF7247 at 27.928 kb on - strand, within GFF7247 at 27.928 kb on - strand, within GFF7247 at 27.928 kb on - strand, within GFF7247 at 28.128 kb on - strand, within GFF7247 at 28.275 kb on - strand, within GFF7247 at 28.427 kb on + strand, within GFF7248 at 28.428 kb on - strand, within GFF7248 at 28.683 kb on + strand, within GFF7249
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 25,734 - -1.0 25,740 - -3.6 25,994 + -1.9 26,126 + GFF7245 0.39 +1.9 26,126 + GFF7245 0.39 -0.8 26,682 + GFF7246 0.21 -0.7 26,682 + GFF7246 0.21 +1.1 26,682 + GFF7246 0.21 +2.5 26,946 + GFF7246 0.39 +0.9 26,946 + GFF7246 0.39 -2.7 26,946 + GFF7246 0.39 -1.0 26,947 - GFF7246 0.39 +2.3 26,947 - GFF7246 0.39 -1.4 26,947 - GFF7246 0.39 -1.0 26,947 - GFF7246 0.39 -2.3 27,066 + GFF7246 0.47 -0.1 27,067 - GFF7246 0.47 -1.3 27,253 + GFF7246 0.60 -2.7 27,253 + GFF7246 0.60 +2.2 27,254 - GFF7246 0.60 +1.0 27,343 - GFF7246 0.67 -0.3 27,343 - GFF7246 0.67 +0.9 27,570 + GFF7246 0.82 -0.5 27,570 + GFF7246 0.82 -0.1 27,570 + GFF7246 0.82 -1.0 27,570 + GFF7246 0.82 +0.2 27,571 - GFF7246 0.82 -3.2 27,571 - GFF7246 0.82 +0.0 27,604 + GFF7246 0.85 -0.0 27,744 + +1.7 27,744 + +1.3 27,745 - +0.6 27,745 - -0.7 27,748 + -0.8 27,748 + -0.7 27,749 - +0.7 27,749 - -0.7 27,816 - +0.7 27,927 + GFF7247 0.17 -2.2 27,928 - GFF7247 0.17 +2.2 27,928 - GFF7247 0.17 -0.9 27,928 - GFF7247 0.17 +1.7 28,128 - GFF7247 0.55 +1.4 28,275 - GFF7247 0.82 +1.3 28,427 + GFF7248 0.12 -1.0 28,428 - GFF7248 0.13 -0.9 28,683 + GFF7249 0.40 -1.0
Or see this region's nucleotide sequence