Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7146 and GFF7147 overlap by 4 nucleotides GFF7147 and GFF7148 overlap by 4 nucleotides
GFF7146 - Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster, at 12,084 to 13,388
GFF7146
GFF7147 - Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain, at 13,385 to 13,639
GFF7147
GFF7148 - D-amino-acid oxidase (EC 1.4.3.3), at 13,636 to 14,739
GFF7148
Position (kb) 13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 12.426 kb on + strand, within GFF7146 at 12.426 kb on + strand, within GFF7146 at 12.426 kb on + strand, within GFF7146 at 12.426 kb on + strand, within GFF7146 at 12.426 kb on + strand, within GFF7146 at 12.426 kb on + strand, within GFF7146 at 12.427 kb on - strand, within GFF7146 at 12.427 kb on - strand, within GFF7146 at 12.427 kb on - strand, within GFF7146 at 12.427 kb on - strand, within GFF7146 at 12.427 kb on - strand, within GFF7146 at 12.427 kb on - strand, within GFF7146 at 12.427 kb on - strand, within GFF7146 at 12.427 kb on - strand, within GFF7146 at 12.427 kb on - strand, within GFF7146 at 12.532 kb on + strand, within GFF7146 at 12.532 kb on + strand, within GFF7146 at 12.532 kb on + strand, within GFF7146 at 12.532 kb on + strand, within GFF7146 at 12.532 kb on + strand, within GFF7146 at 12.532 kb on + strand, within GFF7146 at 12.532 kb on + strand, within GFF7146 at 12.532 kb on + strand, within GFF7146 at 12.532 kb on + strand, within GFF7146 at 12.533 kb on - strand, within GFF7146 at 12.533 kb on - strand, within GFF7146 at 12.533 kb on - strand, within GFF7146 at 12.533 kb on - strand, within GFF7146 at 12.533 kb on - strand, within GFF7146 at 12.533 kb on - strand, within GFF7146 at 12.533 kb on - strand, within GFF7146 at 12.533 kb on - strand, within GFF7146 at 13.886 kb on + strand, within GFF7148 at 13.886 kb on + strand, within GFF7148 at 13.887 kb on - strand, within GFF7148 at 13.887 kb on - strand, within GFF7148 at 14.048 kb on + strand, within GFF7148 at 14.048 kb on + strand, within GFF7148 at 14.048 kb on + strand, within GFF7148 at 14.048 kb on + strand, within GFF7148 at 14.048 kb on + strand, within GFF7148 at 14.049 kb on - strand, within GFF7148 at 14.049 kb on - strand, within GFF7148 at 14.049 kb on - strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.312 kb on + strand, within GFF7148 at 14.313 kb on - strand, within GFF7148 at 14.313 kb on - strand, within GFF7148 at 14.313 kb on - strand, within GFF7148 at 14.313 kb on - strand, within GFF7148 at 14.504 kb on + strand, within GFF7148 at 14.504 kb on + strand, within GFF7148 at 14.505 kb on - strand, within GFF7148 at 14.505 kb on - strand, within GFF7148 at 14.505 kb on - strand, within GFF7148 at 14.505 kb on - strand, within GFF7148 at 14.505 kb on - strand, within GFF7148
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 12,426 + GFF7146 0.26 +2.2 12,426 + GFF7146 0.26 -0.1 12,426 + GFF7146 0.26 -0.4 12,426 + GFF7146 0.26 -0.9 12,426 + GFF7146 0.26 +1.0 12,426 + GFF7146 0.26 -0.8 12,427 - GFF7146 0.26 +0.9 12,427 - GFF7146 0.26 -0.9 12,427 - GFF7146 0.26 +0.3 12,427 - GFF7146 0.26 +0.6 12,427 - GFF7146 0.26 +0.7 12,427 - GFF7146 0.26 +1.1 12,427 - GFF7146 0.26 +0.1 12,427 - GFF7146 0.26 -0.1 12,427 - GFF7146 0.26 +0.1 12,532 + GFF7146 0.34 +1.0 12,532 + GFF7146 0.34 +2.3 12,532 + GFF7146 0.34 -1.4 12,532 + GFF7146 0.34 +2.5 12,532 + GFF7146 0.34 -1.3 12,532 + GFF7146 0.34 +3.1 12,532 + GFF7146 0.34 +0.6 12,532 + GFF7146 0.34 -0.0 12,532 + GFF7146 0.34 -2.2 12,533 - GFF7146 0.34 +0.3 12,533 - GFF7146 0.34 -0.6 12,533 - GFF7146 0.34 -2.3 12,533 - GFF7146 0.34 +0.3 12,533 - GFF7146 0.34 +0.3 12,533 - GFF7146 0.34 +1.9 12,533 - GFF7146 0.34 -1.6 12,533 - GFF7146 0.34 +1.0 13,886 + GFF7148 0.23 +1.1 13,886 + GFF7148 0.23 +0.8 13,887 - GFF7148 0.23 -2.0 13,887 - GFF7148 0.23 +0.3 14,048 + GFF7148 0.37 +1.0 14,048 + GFF7148 0.37 -1.1 14,048 + GFF7148 0.37 +0.7 14,048 + GFF7148 0.37 +0.7 14,048 + GFF7148 0.37 -1.8 14,049 - GFF7148 0.37 -1.1 14,049 - GFF7148 0.37 -1.0 14,049 - GFF7148 0.37 -1.7 14,312 + GFF7148 0.61 +1.0 14,312 + GFF7148 0.61 -1.1 14,312 + GFF7148 0.61 +1.6 14,312 + GFF7148 0.61 -0.6 14,312 + GFF7148 0.61 +1.0 14,312 + GFF7148 0.61 -1.7 14,312 + GFF7148 0.61 +0.0 14,312 + GFF7148 0.61 -4.0 14,312 + GFF7148 0.61 +0.4 14,312 + GFF7148 0.61 +0.3 14,313 - GFF7148 0.61 +0.7 14,313 - GFF7148 0.61 -1.0 14,313 - GFF7148 0.61 +2.7 14,313 - GFF7148 0.61 +0.3 14,504 + GFF7148 0.79 +0.6 14,504 + GFF7148 0.79 -2.3 14,505 - GFF7148 0.79 -0.6 14,505 - GFF7148 0.79 -0.4 14,505 - GFF7148 0.79 -0.6 14,505 - GFF7148 0.79 -0.4 14,505 - GFF7148 0.79 -1.8
Or see this region's nucleotide sequence