Strain Fitness in Variovorax sp. SCN45 around GFF7089

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
10,973	+		GFF7088	0.28	+0.3
10,973	+		GFF7088	0.28	+0.6
10,973	+		GFF7088	0.28	-3.2
10,974	-		GFF7088	0.28	+1.5
10,984	+		GFF7088	0.29	-2.0
10,984	+		GFF7088	0.29	-0.8
10,984	+		GFF7088	0.29	+0.5
10,985	-		GFF7088	0.29	-2.5
10,985	-		GFF7088	0.29	-1.7
11,033	+		GFF7088	0.32	+1.5
11,033	+		GFF7088	0.32	-4.3
11,033	+		GFF7088	0.32	+0.0
11,033	+		GFF7088	0.32	-1.4
11,033	+		GFF7088	0.32	-0.8
11,034	-		GFF7088	0.33	+0.1
11,034	-		GFF7088	0.33	-1.3
11,034	-		GFF7088	0.33	-0.2
11,034	-		GFF7088	0.33	+0.9
11,079	+		GFF7088	0.36	+2.6
11,080	-		GFF7088	0.36	-2.3
11,080	-		GFF7088	0.36	+0.8
11,087	+		GFF7088	0.36	+0.0
11,087	+		GFF7088	0.36	+0.9
11,087	+		GFF7088	0.36	-1.8
11,087	+		GFF7088	0.36	-1.1
11,088	-		GFF7088	0.36	-0.3
11,088	-		GFF7088	0.36	-0.1
11,088	-		GFF7088	0.36	-0.4
11,088	-		GFF7088	0.36	+1.0
11,088	-		GFF7088	0.36	-1.7
11,088	-		GFF7088	0.36	-1.5
11,088	-		GFF7088	0.36	-2.4
11,088	-		GFF7088	0.36	+1.7
11,088	-		GFF7088	0.36	+0.6
11,088	-		GFF7088	0.36	-0.3
11,088	-		GFF7088	0.36	-1.8
11,230	+		GFF7088	0.47	-1.4
11,230	+		GFF7088	0.47	-2.1
11,230	+		GFF7088	0.47	-1.7
11,231	-		GFF7088	0.47	-0.1
11,234	+		GFF7088	0.47	+2.6
11,234	+		GFF7088	0.47	-0.2
11,234	+		GFF7088	0.47	+0.5
11,234	+		GFF7088	0.47	-2.4
11,234	+		GFF7088	0.47	+0.2
11,234	+		GFF7088	0.47	-0.1
11,234	+		GFF7088	0.47	-1.0
11,234	+		GFF7088	0.47	-1.3
11,234	+		GFF7088	0.47	-0.7
11,234	+		GFF7088	0.47	-0.9
11,234	+		GFF7088	0.47	+0.4
11,235	-		GFF7088	0.47	-2.1
11,235	-		GFF7088	0.47	-2.4
11,235	-		GFF7088	0.47	-0.3
11,235	-		GFF7088	0.47	-1.3
11,235	-		GFF7088	0.47	+0.8
11,235	-		GFF7088	0.47	+2.6
11,235	-		GFF7088	0.47	-0.5
11,324	+		GFF7088	0.54	-0.2
11,414	+		GFF7088	0.60	+0.3
11,414	+		GFF7088	0.60	+1.6
11,414	+		GFF7088	0.60	-1.0
11,414	+		GFF7088	0.60	-2.0
11,414	+		GFF7088	0.60	-0.9
11,414	+		GFF7088	0.60	+0.2
11,414	+		GFF7088	0.60	+0.2
11,415	-		GFF7088	0.60	+2.1
11,441	+		GFF7088	0.62	+1.4
11,441	+		GFF7088	0.62	-0.9
11,442	-		GFF7088	0.62	-2.5
11,476	+		GFF7088	0.65	+3.1
11,476	+		GFF7088	0.65	+0.4
11,476	+		GFF7088	0.65	+1.3
11,476	+		GFF7088	0.65	+1.8
11,476	+		GFF7088	0.65	-0.4
11,477	-		GFF7088	0.65	+1.2
11,477	-		GFF7088	0.65	+1.0
11,522	+		GFF7088	0.68	-0.4
11,522	+		GFF7088	0.68	+0.2
11,522	+		GFF7088	0.68	-0.7
11,523	-		GFF7088	0.68	+0.2
11,643	+		GFF7088	0.77	-0.0
11,643	+		GFF7088	0.77	-2.0
11,644	-		GFF7088	0.77	+2.2
11,644	-		GFF7088	0.77	+0.5
11,644	-		GFF7088	0.77	-1.4
11,644	-		GFF7088	0.77	+0.1
11,644	-		GFF7088	0.77	+0.5
11,659	+		GFF7088	0.78	+0.9
11,659	+		GFF7088	0.78	-1.3
11,659	+		GFF7088	0.78	+0.3
11,659	+		GFF7088	0.78	-0.3
11,660	-		GFF7088	0.78	+0.2
11,660	-		GFF7088	0.78	+0.2
11,663	+		GFF7088	0.79	-1.0
11,663	+		GFF7088	0.79	-1.8
11,663	+		GFF7088	0.79	-0.4
11,663	+		GFF7088	0.79	-1.1
11,663	+		GFF7088	0.79	-2.9
11,663	+		GFF7088	0.79	-0.4
11,663	+		GFF7088	0.79	-2.2
11,664	-		GFF7088	0.79	-0.3
11,664	-		GFF7088	0.79	+1.1
11,664	-		GFF7088	0.79	+0.6
11,664	-		GFF7088	0.79	-0.3
11,664	-		GFF7088	0.79	-1.3
11,666	+		GFF7088	0.79	-2.6
11,666	+		GFF7088	0.79	-0.1
11,666	+		GFF7088	0.79	-3.2
11,666	+		GFF7088	0.79	-1.5
11,666	+		GFF7088	0.79	+2.1
11,666	+		GFF7088	0.79	-0.8
11,666	+		GFF7088	0.79	+0.3
11,666	+		GFF7088	0.79	-0.6
11,666	+		GFF7088	0.79	-1.1
11,666	+		GFF7088	0.79	-1.1
11,666	+		GFF7088	0.79	+0.2
11,666	+		GFF7088	0.79	-1.1
11,666	+		GFF7088	0.79	-0.0
11,667	-		GFF7088	0.79	-0.5
11,667	-		GFF7088	0.79	-0.9
11,667	-		GFF7088	0.79	-1.5
11,667	-		GFF7088	0.79	+0.6
11,667	-		GFF7088	0.79	+0.5
11,667	-		GFF7088	0.79	-2.4
11,667	-		GFF7088	0.79	-2.5
11,667	-		GFF7088	0.79	+0.5
11,667	-		GFF7088	0.79	-0.5
11,667	-		GFF7088	0.79	-1.5
11,667	-		GFF7088	0.79	-1.3
11,667	-		GFF7088	0.79	-1.4
11,726	+		GFF7088	0.83	-0.3
11,726	+		GFF7088	0.83	-0.3
11,726	+		GFF7088	0.83	-0.0
11,727	-		GFF7088	0.83	-0.2
11,777	+		GFF7088	0.87	-1.2
11,777	+		GFF7088	0.87	-2.0
11,778	-		GFF7088	0.87	-0.8
11,778	-		GFF7088	0.87	+0.4
11,885	+				+0.5
11,885	+				+0.6
11,885	+				-0.5
11,885	+				-1.2
11,886	-				-0.3
11,886	-				+0.2
11,886	-				-1.4
11,886	-				+0.7
11,886	-				+0.5
11,886	-				-1.2
12,207	+		GFF7089	0.31	+0.4
12,321	+		GFF7089	0.46	+0.5
12,321	+		GFF7089	0.46	+2.1
12,321	+		GFF7089	0.46	-1.0
12,321	+		GFF7089	0.46	-0.8
12,321	+		GFF7089	0.46	-2.7
12,321	+		GFF7089	0.46	-0.7
12,322	-		GFF7089	0.46	+1.4
12,322	-		GFF7089	0.46	-0.8
12,322	-		GFF7089	0.46	-0.8
12,322	-		GFF7089	0.46	-0.5
12,322	-		GFF7089	0.46	-0.9
12,426	+		GFF7089	0.59	-0.6
12,426	+		GFF7089	0.59	-0.2
12,426	+		GFF7089	0.59	-0.5
12,427	-		GFF7089	0.59	-0.1
12,474	+		GFF7089	0.65	+3.5
12,475	-		GFF7089	0.65	-1.7
12,475	-		GFF7089	0.65	+1.5
12,475	-		GFF7089	0.65	-1.1
12,608	-		GFF7089	0.82	+0.3
12,637	+		GFF7089	0.86	-1.6
12,638	-		GFF7089	0.86	-1.4
12,718	-				-0.3
12,826	+				-1.7
12,827	-				-0.5
12,845	+		GFF7090	0.12	-0.9
12,845	+		GFF7090	0.12	+3.5
12,846	-		GFF7090	0.12	+2.4
12,848	+		GFF7090	0.13	-1.2
12,848	+		GFF7090	0.13	-2.8
12,848	+		GFF7090	0.13	-0.3
12,848	+		GFF7090	0.13	-0.7
12,848	+		GFF7090	0.13	-0.1
12,848	+		GFF7090	0.13	-1.6
12,849	-		GFF7090	0.13	-2.2
12,849	-		GFF7090	0.13	-2.2
12,849	-		GFF7090	0.13	+3.9
12,953	+		GFF7090	0.30	-0.8
12,954	-		GFF7090	0.30	-1.2
12,954	-		GFF7090	0.30	-1.4
12,954	-		GFF7090	0.30	-0.1
13,150	+		GFF7090	0.63	+0.4
13,151	-		GFF7090	0.64	-0.2
13,168	+		GFF7090	0.66	-0.1
13,168	+		GFF7090	0.66	-1.4
13,168	+		GFF7090	0.66	-0.5
13,168	+		GFF7090	0.66	+0.6
13,169	-		GFF7090	0.67	+0.1
13,169	-		GFF7090	0.67	-0.5
13,169	-		GFF7090	0.67	-1.6
13,214	+		GFF7090	0.74	+0.6
13,214	+		GFF7090	0.74	+0.2
13,214	+		GFF7090	0.74	-1.9
13,215	-		GFF7090	0.74	+1.6
13,233	-		GFF7090	0.77	-2.5
13,241	+		GFF7090	0.79	+0.2
13,241	+		GFF7090	0.79	+1.0
13,242	-		GFF7090	0.79	-1.7
13,332	+				-0.8
13,332	+				-0.6
13,332	+				-0.8
13,333	-				+1.5
13,333	-				-0.3
13,365	-				-0.1
13,365	-				-1.4
13,395	+		GFF7091	0.11	-3.6
13,409	+		GFF7091	0.19	+1.4
13,410	-		GFF7091	0.19	-1.5
13,449	-		GFF7091	0.41	-1.4
13,602	+		GFF7092	0.33	+0.9
13,602	+		GFF7092	0.33	-0.6
13,603	-		GFF7092	0.34	-1.8
13,603	-		GFF7092	0.34	+3.4
13,603	-		GFF7092	0.34	-3.1
13,603	-		GFF7092	0.34	-2.2
13,603	-		GFF7092	0.34	-0.2
13,667	+		GFF7092	0.76	-1.5
13,667	+		GFF7092	0.76	-0.6
13,668	-		GFF7092	0.76	+0.1
13,668	-		GFF7092	0.76	+0.0
13,668	-		GFF7092	0.76	-0.2
13,668	-		GFF7092	0.76	-0.5
13,668	-		GFF7092	0.76	-0.3