Strain Fitness in Variovorax sp. SCN45 around GFF708

Experiment: Community=Locust bean gum; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF707 and GFF708 are separated by 4 nucleotidesGFF708 and GFF709 overlap by 1 nucleotides GFF707 - probable integral membrane protein NMA1898, at 764,139 to 765,566 GFF707 GFF708 - Oxidoreductase, GMC family, at 765,571 to 767,286 GFF708 GFF709 - ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose), at 767,286 to 768,446 GFF709 Position (kb) 765 766 767 768Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 764.659 kb on - strand, within GFF707at 764.724 kb on + strand, within GFF707at 764.724 kb on + strand, within GFF707at 764.724 kb on + strand, within GFF707at 764.724 kb on + strand, within GFF707at 764.724 kb on + strand, within GFF707at 764.724 kb on + strand, within GFF707at 764.724 kb on + strand, within GFF707at 764.724 kb on + strand, within GFF707at 764.724 kb on + strand, within GFF707at 764.725 kb on - strand, within GFF707at 764.725 kb on - strand, within GFF707at 764.725 kb on - strand, within GFF707at 764.986 kb on - strand, within GFF707at 764.986 kb on - strand, within GFF707at 765.716 kb on + strandat 765.996 kb on - strand, within GFF708at 765.996 kb on - strand, within GFF708at 766.298 kb on + strand, within GFF708at 766.298 kb on + strand, within GFF708at 766.298 kb on + strand, within GFF708at 766.299 kb on - strand, within GFF708at 766.299 kb on - strand, within GFF708at 766.361 kb on + strand, within GFF708at 766.362 kb on - strand, within GFF708at 766.594 kb on + strand, within GFF708at 766.594 kb on + strand, within GFF708at 766.594 kb on + strand, within GFF708at 766.594 kb on + strand, within GFF708at 766.594 kb on + strand, within GFF708at 766.595 kb on - strand, within GFF708at 766.595 kb on - strand, within GFF708at 766.595 kb on - strand, within GFF708at 766.595 kb on - strand, within GFF708at 766.595 kb on - strand, within GFF708at 766.595 kb on - strand, within GFF708at 766.595 kb on - strand, within GFF708at 766.595 kb on - strand, within GFF708at 766.595 kb on - strand, within GFF708at 766.652 kb on + strand, within GFF708at 766.745 kb on + strand, within GFF708at 766.896 kb on - strand, within GFF708at 766.896 kb on - strand, within GFF708at 766.896 kb on - strand, within GFF708at 766.953 kb on - strand, within GFF708at 767.114 kb on + strand, within GFF708at 767.115 kb on - strandat 767.268 kb on - strandat 767.268 kb on - strandat 767.268 kb on - strandat 767.287 kb on + strandat 767.347 kb on + strandat 767.348 kb on - strandat 767.377 kb on + strandat 767.377 kb on + strandat 767.377 kb on + strandat 767.377 kb on + strandat 767.377 kb on + strandat 767.378 kb on - strandat 767.491 kb on + strand, within GFF709at 767.492 kb on - strand, within GFF709at 767.548 kb on + strand, within GFF709at 767.548 kb on + strand, within GFF709at 767.549 kb on - strand, within GFF709at 767.549 kb on - strand, within GFF709at 767.549 kb on - strand, within GFF709at 767.549 kb on - strand, within GFF709at 767.582 kb on - strand, within GFF709at 767.582 kb on - strand, within GFF709at 767.677 kb on + strand, within GFF709at 767.677 kb on + strand, within GFF709at 767.678 kb on - strand, within GFF709at 767.740 kb on + strand, within GFF709at 767.888 kb on - strand, within GFF709at 767.888 kb on - strand, within GFF709at 768.101 kb on - strand, within GFF709at 768.101 kb on - strand, within GFF709at 768.211 kb on + strand, within GFF709at 768.211 kb on + strand, within GFF709at 768.211 kb on + strand, within GFF709at 768.212 kb on - strand, within GFF709at 768.229 kb on + strand, within GFF709at 768.229 kb on + strand, within GFF709at 768.229 kb on + strand, within GFF709at 768.229 kb on + strand, within GFF709at 768.230 kb on - strand, within GFF709at 768.230 kb on - strand, within GFF709at 768.230 kb on - strand, within GFF709

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4
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764,659 - GFF707 0.36 +0.1
764,724 + GFF707 0.41 +1.0
764,724 + GFF707 0.41 -1.0
764,724 + GFF707 0.41 +1.7
764,724 + GFF707 0.41 -1.2
764,724 + GFF707 0.41 -1.2
764,724 + GFF707 0.41 -0.7
764,724 + GFF707 0.41 -0.6
764,724 + GFF707 0.41 -0.1
764,724 + GFF707 0.41 -1.7
764,725 - GFF707 0.41 +0.4
764,725 - GFF707 0.41 -1.3
764,725 - GFF707 0.41 +0.3
764,986 - GFF707 0.59 +1.5
764,986 - GFF707 0.59 +1.3
765,716 + -0.2
765,996 - GFF708 0.25 +0.0
765,996 - GFF708 0.25 -3.9
766,298 + GFF708 0.42 -0.4
766,298 + GFF708 0.42 +0.2
766,298 + GFF708 0.42 -0.8
766,299 - GFF708 0.42 -1.9
766,299 - GFF708 0.42 +0.4
766,361 + GFF708 0.46 -0.4
766,362 - GFF708 0.46 -0.2
766,594 + GFF708 0.60 +1.0
766,594 + GFF708 0.60 +1.1
766,594 + GFF708 0.60 -1.0
766,594 + GFF708 0.60 -2.6
766,594 + GFF708 0.60 -2.2
766,595 - GFF708 0.60 +0.5
766,595 - GFF708 0.60 -0.4
766,595 - GFF708 0.60 -1.2
766,595 - GFF708 0.60 +0.3
766,595 - GFF708 0.60 +1.8
766,595 - GFF708 0.60 -1.0
766,595 - GFF708 0.60 -0.6
766,595 - GFF708 0.60 -1.4
766,595 - GFF708 0.60 -0.4
766,652 + GFF708 0.63 +0.8
766,745 + GFF708 0.68 +2.6
766,896 - GFF708 0.77 +0.8
766,896 - GFF708 0.77 +0.1
766,896 - GFF708 0.77 +0.8
766,953 - GFF708 0.81 -0.8
767,114 + GFF708 0.90 +2.4
767,115 - -1.2
767,268 - -0.1
767,268 - +1.1
767,268 - +0.1
767,287 + -0.7
767,347 + -2.6
767,348 - -2.7
767,377 + -0.3
767,377 + -1.2
767,377 + +0.6
767,377 + -0.6
767,377 + +2.4
767,378 - -0.0
767,491 + GFF709 0.18 -1.8
767,492 - GFF709 0.18 -0.2
767,548 + GFF709 0.23 +0.4
767,548 + GFF709 0.23 +1.8
767,549 - GFF709 0.23 -0.7
767,549 - GFF709 0.23 +0.5
767,549 - GFF709 0.23 -0.0
767,549 - GFF709 0.23 -2.2
767,582 - GFF709 0.25 +0.5
767,582 - GFF709 0.25 +0.8
767,677 + GFF709 0.34 -1.8
767,677 + GFF709 0.34 +0.3
767,678 - GFF709 0.34 -0.1
767,740 + GFF709 0.39 -1.2
767,888 - GFF709 0.52 -2.0
767,888 - GFF709 0.52 +1.3
768,101 - GFF709 0.70 -0.5
768,101 - GFF709 0.70 +0.5
768,211 + GFF709 0.80 -1.6
768,211 + GFF709 0.80 -1.7
768,211 + GFF709 0.80 -2.8
768,212 - GFF709 0.80 +2.2
768,229 + GFF709 0.81 -0.6
768,229 + GFF709 0.81 +0.2
768,229 + GFF709 0.81 -2.5
768,229 + GFF709 0.81 -1.4
768,230 - GFF709 0.81 +0.7
768,230 - GFF709 0.81 -0.6
768,230 - GFF709 0.81 -1.0

Or see this region's nucleotide sequence