Strain Fitness in Variovorax sp. SCN45 around GFF7049

Experiment: Community=Locust bean gum; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=Locust bean gum; Passage=4
8,656	+		GFF7047	0.54	-1.9
8,656	+		GFF7047	0.54	-0.0
8,656	+		GFF7047	0.54	-1.3
8,657	-		GFF7047	0.54	+1.0
8,743	+		GFF7047	0.86	-1.8
8,756	-				-1.5
8,779	+				-1.5
8,779	+				-1.0
8,779	+				-1.2
8,779	+				-1.8
8,780	-				-1.4
9,213	+		GFF7048	0.52	+2.8
9,214	-		GFF7048	0.52	-1.0
9,404	+		GFF7048	0.75	-0.1
9,404	+		GFF7048	0.75	+3.3
9,404	+		GFF7048	0.75	+0.9
9,405	-		GFF7048	0.75	-0.6
9,405	-		GFF7048	0.75	-2.7
9,405	-		GFF7048	0.75	+1.2
9,440	+		GFF7048	0.79	+0.6
9,609	+				+0.7
9,807	+		GFF7049	0.37	+0.2
9,949	-		GFF7049	0.68	-0.4
9,978	+		GFF7049	0.74	+0.1
9,978	+		GFF7049	0.74	-4.4
9,978	+		GFF7049	0.74	-0.8
9,978	+		GFF7049	0.74	+0.7
9,978	+		GFF7049	0.74	+1.0
9,979	-		GFF7049	0.75	-1.5
9,979	-		GFF7049	0.75	-1.3
9,979	-		GFF7049	0.75	+2.1
9,979	-		GFF7049	0.75	+1.8
9,979	-		GFF7049	0.75	-2.5
9,979	-		GFF7049	0.75	+1.0
9,979	-		GFF7049	0.75	-1.1
10,092	+				-0.2
10,092	-				-0.1
10,122	+				+1.6
10,122	+				+0.8
10,122	+				-1.2
10,122	+				+1.7
10,122	+				-3.4
10,122	+				-0.3
10,123	-				+0.8
10,123	-				-2.8
10,123	-				-3.0
10,123	-				+0.0
10,123	-				+1.4
10,131	+				-0.4
10,132	-				+0.1
10,132	-				-2.0
10,410	+		GFF7050	0.37	+0.1
10,410	+		GFF7050	0.37	-1.8
10,410	+		GFF7050	0.37	-1.9
10,411	-		GFF7050	0.37	+0.3
10,411	-		GFF7050	0.37	+0.3
10,411	-		GFF7050	0.37	+0.5
10,411	-		GFF7050	0.37	-1.0
10,500	-		GFF7050	0.48	+2.0
10,617	+		GFF7050	0.63	+0.8
10,617	+		GFF7050	0.63	+0.4
10,617	+		GFF7050	0.63	+1.0
10,617	+		GFF7050	0.63	-0.0
10,617	+		GFF7050	0.63	-0.2
10,617	+		GFF7050	0.63	+2.0
10,617	+		GFF7050	0.63	+1.2
10,617	+		GFF7050	0.63	-2.1
10,617	+		GFF7050	0.63	-1.9
10,618	-		GFF7050	0.63	-0.6
10,618	-		GFF7050	0.63	+0.2
10,618	-		GFF7050	0.63	-0.6
10,618	-		GFF7050	0.63	+0.4
10,618	-		GFF7050	0.63	-0.3
10,618	-		GFF7050	0.63	+0.8
10,618	-		GFF7050	0.63	+0.2
10,618	-		GFF7050	0.63	-2.5
10,717	-		GFF7050	0.75	+0.5
10,773	+		GFF7050	0.82	+1.1
10,773	+		GFF7050	0.82	+0.3
10,773	+		GFF7050	0.82	-0.5
10,773	+		GFF7050	0.82	-1.0
10,774	-		GFF7050	0.82	-2.4
10,774	-		GFF7050	0.82	-1.0
11,024	+				-1.9
11,024	+				-0.5
11,024	+				-1.0
11,024	+				-2.1