Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF7011 and GFF7012 overlap by 8 nucleotides GFF7012 and GFF7013 are separated by 53 nucleotides
GFF7011 - Taurine ABC transporter, permease protein TauC, at 26,614 to 27,510
GFF7011
GFF7012 - Taurine ABC transporter, ATP-binding protein TauB, at 27,503 to 28,291
GFF7012
GFF7013 - Taurine ABC transporter, substrate-binding protein TauA, at 28,345 to 29,355
GFF7013
Position (kb) 27
28
29 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 26.615 kb on + strand at 26.679 kb on - strand at 26.891 kb on + strand, within GFF7011 at 26.892 kb on - strand, within GFF7011 at 26.910 kb on - strand, within GFF7011 at 27.609 kb on + strand, within GFF7012 at 27.609 kb on + strand, within GFF7012 at 27.650 kb on - strand, within GFF7012 at 27.650 kb on - strand, within GFF7012 at 27.650 kb on - strand, within GFF7012 at 27.735 kb on + strand, within GFF7012 at 27.894 kb on + strand, within GFF7012 at 27.912 kb on + strand, within GFF7012 at 28.255 kb on - strand at 28.255 kb on - strand at 28.346 kb on + strand at 28.346 kb on + strand at 28.347 kb on - strand at 28.347 kb on - strand at 28.370 kb on + strand at 28.370 kb on + strand at 28.395 kb on - strand at 28.520 kb on + strand, within GFF7013 at 28.520 kb on + strand, within GFF7013 at 28.625 kb on + strand, within GFF7013 at 28.626 kb on - strand, within GFF7013 at 28.626 kb on - strand, within GFF7013 at 28.925 kb on + strand, within GFF7013 at 28.926 kb on - strand, within GFF7013
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 26,615 + -1.0 26,679 - +0.8 26,891 + GFF7011 0.31 +1.7 26,892 - GFF7011 0.31 -0.7 26,910 - GFF7011 0.33 +0.9 27,609 + GFF7012 0.13 -1.1 27,609 + GFF7012 0.13 -3.0 27,650 - GFF7012 0.19 -4.2 27,650 - GFF7012 0.19 -0.1 27,650 - GFF7012 0.19 +1.5 27,735 + GFF7012 0.29 -2.3 27,894 + GFF7012 0.50 -2.0 27,912 + GFF7012 0.52 +1.6 28,255 - -0.0 28,255 - +1.7 28,346 + +1.1 28,346 + -0.8 28,347 - +1.1 28,347 - -0.8 28,370 + -0.5 28,370 + +1.0 28,395 - +1.2 28,520 + GFF7013 0.17 -0.9 28,520 + GFF7013 0.17 -0.8 28,625 + GFF7013 0.28 +0.5 28,626 - GFF7013 0.28 -2.9 28,626 - GFF7013 0.28 -2.5 28,925 + GFF7013 0.57 +1.4 28,926 - GFF7013 0.57 -2.0
Or see this region's nucleotide sequence