Experiment: Community=Locust bean gum; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5 and GFF6 overlap by 37 nucleotides GFF6 and GFF7 overlap by 4 nucleotides GFF7 and GFF8 overlap by 4 nucleotides
GFF5 - FIG00537881: hypothetical protein, at 4,278 to 5,351
GFF5
GFF6 - hypothetical protein, at 5,315 to 5,710
GFF6
GFF7 - no description, at 5,707 to 6,081
GFF7
GFF8 - RND efflux system, outer membrane lipoprotein, NodT family, at 6,078 to 7,592
GFF8
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.755 kb on + strand, within GFF5 at 4.755 kb on + strand, within GFF5 at 4.755 kb on + strand, within GFF5 at 4.756 kb on - strand, within GFF5 at 4.756 kb on - strand, within GFF5 at 4.756 kb on - strand, within GFF5 at 4.986 kb on + strand, within GFF5 at 5.010 kb on + strand, within GFF5 at 5.010 kb on + strand, within GFF5 at 5.011 kb on - strand, within GFF5 at 5.011 kb on - strand, within GFF5 at 5.028 kb on + strand, within GFF5 at 5.058 kb on + strand, within GFF5 at 5.511 kb on + strand, within GFF6 at 5.512 kb on - strand, within GFF6 at 5.512 kb on - strand, within GFF6 at 5.640 kb on + strand, within GFF6 at 5.656 kb on + strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.657 kb on - strand, within GFF6 at 5.756 kb on + strand, within GFF7 at 5.849 kb on + strand, within GFF7 at 5.850 kb on - strand, within GFF7 at 5.870 kb on + strand, within GFF7 at 5.870 kb on + strand, within GFF7 at 5.871 kb on - strand, within GFF7 at 5.871 kb on - strand, within GFF7 at 5.871 kb on - strand, within GFF7 at 6.002 kb on + strand, within GFF7 at 6.002 kb on + strand, within GFF7 at 6.002 kb on + strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.003 kb on - strand, within GFF7 at 6.308 kb on + strand, within GFF8 at 6.308 kb on + strand, within GFF8 at 6.309 kb on - strand, within GFF8 at 6.434 kb on - strand, within GFF8 at 6.574 kb on + strand, within GFF8 at 6.575 kb on - strand, within GFF8 at 6.575 kb on - strand, within GFF8 at 6.575 kb on - strand, within GFF8 at 6.589 kb on + strand, within GFF8 at 6.589 kb on + strand, within GFF8 at 6.590 kb on - strand, within GFF8 at 6.590 kb on - strand, within GFF8 at 6.590 kb on - strand, within GFF8 at 6.934 kb on + strand, within GFF8 at 6.935 kb on - strand, within GFF8
Per-strain Table
Position Strand Gene LocusTag Fraction Community=Locust bean gum; Passage=4 remove 4,755 + GFF5 0.44 -1.6 4,755 + GFF5 0.44 +0.4 4,755 + GFF5 0.44 -3.3 4,756 - GFF5 0.45 -1.6 4,756 - GFF5 0.45 -1.7 4,756 - GFF5 0.45 +0.4 4,986 + GFF5 0.66 -2.1 5,010 + GFF5 0.68 -2.0 5,010 + GFF5 0.68 +1.4 5,011 - GFF5 0.68 -0.6 5,011 - GFF5 0.68 +0.2 5,028 + GFF5 0.70 +1.2 5,058 + GFF5 0.73 +0.5 5,511 + GFF6 0.49 -2.0 5,512 - GFF6 0.50 -1.2 5,512 - GFF6 0.50 -0.8 5,640 + GFF6 0.82 -0.2 5,656 + GFF6 0.86 -2.4 5,657 - GFF6 0.86 -1.6 5,657 - GFF6 0.86 +0.5 5,657 - GFF6 0.86 +1.9 5,657 - GFF6 0.86 +0.3 5,657 - GFF6 0.86 +0.2 5,756 + GFF7 0.13 -0.2 5,849 + GFF7 0.38 +0.2 5,850 - GFF7 0.38 +0.2 5,870 + GFF7 0.43 +0.1 5,870 + GFF7 0.43 +0.4 5,871 - GFF7 0.44 +1.9 5,871 - GFF7 0.44 -0.6 5,871 - GFF7 0.44 +0.8 6,002 + GFF7 0.79 +0.5 6,002 + GFF7 0.79 +0.7 6,002 + GFF7 0.79 -0.6 6,003 - GFF7 0.79 -0.8 6,003 - GFF7 0.79 -2.0 6,003 - GFF7 0.79 +2.8 6,003 - GFF7 0.79 -0.3 6,003 - GFF7 0.79 -0.6 6,308 + GFF8 0.15 -2.4 6,308 + GFF8 0.15 +1.2 6,309 - GFF8 0.15 -2.0 6,434 - GFF8 0.23 +0.2 6,574 + GFF8 0.33 -1.4 6,575 - GFF8 0.33 -1.0 6,575 - GFF8 0.33 -2.6 6,575 - GFF8 0.33 -0.2 6,589 + GFF8 0.34 -2.0 6,589 + GFF8 0.34 +2.8 6,590 - GFF8 0.34 -0.6 6,590 - GFF8 0.34 +1.0 6,590 - GFF8 0.34 -1.8 6,934 + GFF8 0.57 -0.8 6,935 - GFF8 0.57 -0.6
Or see this region's nucleotide sequence